Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00104
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    27   0.15 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   9.9  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 147 RRLLRYPRSPVNLDRLNISLFAELVXFCHAV*PTRPGA-PRXGEVSSP 287
           R +L YP++ +N    ++SL      F H   P RP A P   E+ SP
Sbjct: 33  RPMLPYPQNYINSYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSP 80


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 624 VKNEGYGTFYKGLVPLW 674
           +  E YG FYK L   W
Sbjct: 293 ISQEEYGEFYKSLTNDW 309


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 696 SCTGSVCPRAAPGPC 652
           S   S+ P+  PGPC
Sbjct: 322 SLVNSMKPKEVPGPC 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,618
Number of Sequences: 336
Number of extensions: 3166
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)