Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00104
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 111 9e-26
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 29 0.87
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 28 1.5
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 27 2.0
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 27 3.5
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 3.5
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 27 3.5
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 6.1
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 25 8.1
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 111 bits (267), Expect = 9e-26
Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Frame = +3
Query: 327 KVSVREEGVRGLAN*WAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLA 506
K + +EG+RGL PT IGYS+QG K+GFYE+FK Y+ ++ + A+ YRT +YLA
Sbjct: 66 KTILSKEGLRGLYTGGMPTLIGYSLQGCGKYGFYELFKHKYSTLVGAQKAHEYRTSIYLA 125
Query: 507 ALRRRNSSPTSPCRPWR--R*GPYPNHAWFREHPPRAWPKMVKNEGYGTFYKGLVPLWGR 680
A P + ++ F AW K+V NEG+GT Y+GL PLW R
Sbjct: 126 ASASAELLADIMLCPMEAIKVRVQTSNPRFANTTREAWSKIVTNEGFGTLYRGLAPLWFR 185
Query: 681 QIPYTMMKFA 710
QIPYTMMKFA
Sbjct: 186 QIPYTMMKFA 195
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 259 PLXLVKCRLQVDAEKYKNVVNGLRCRSARRASAVWPIDGLPLSLG 393
PL L+KCR QV+ Y + G + ++ G+P +G
Sbjct: 43 PLDLIKCRKQVNPNIYPGNIAGFKTILSKEGLRGLYTGGMPTLIG 87
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 28.7 bits (61), Expect = 0.87
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 618 KMVKNEGYGTFYKGLVPLWGRQIPYTMMKFA 710
K+VKNEG Y+G++P + P +KFA
Sbjct: 54 KIVKNEGPHRLYRGILPPILMEAPKRALKFA 84
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 336 VREEGVRGLAN*WAPTFIGYSMQGLCKFGFYEVFKV 443
++ EG+RG +AP+ +G S QG +F YE K+
Sbjct: 144 IKNEGLRGCYAGFAPSLLGVS-QGALQFMAYEKLKL 178
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +3
Query: 210 AELVXFCHAV*PTRPGAPRXGEVSSPGGXXXXXXXXXXLKVSVREEGVRGLAN*WAPTFI 389
A + F +++ R + + GG + + R +G+RGL + P+ +
Sbjct: 144 AASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVV 203
Query: 390 GYSMQGLCKFGFYEVFK-VAYAGMLD 464
G + FG Y+ K V G L+
Sbjct: 204 GIVVYRGLYFGMYDTLKPVVLVGPLE 229
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 618 KMVKNEGYGTFYKGLV-PLWG 677
K+ KNEG FYKG V PL G
Sbjct: 64 KISKNEGLAAFYKGTVLPLLG 84
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 253 RVPLXLVKCRLQVDAEKYK 309
++P+ LV RL++DA++YK
Sbjct: 136 KLPVDLVPIRLEIDADRYK 154
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 339 REEGVRGLAN*WAPTFIGYSMQGLCKFGFYE-VFKVAYAGMLDD 467
R EG+RGL ++ C+ GFYE + + LDD
Sbjct: 79 RHEGIRGLQRGLGTAYVYQICLNGCRLGFYEPIRRTLNTWFLDD 122
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 138 VAWRRLLRYPRSPVN---LDRLNISLFAELVXFCH 233
+AW+ +YP P+ D ++L+AEL+ H
Sbjct: 302 IAWKYFYQYPAPPIGNDIFDLPTLNLYAELLLLDH 336
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +1
Query: 445 PTPVCWTTRPPTLTVPSCTWRLCVG-GIHRRHRPVAHGGAKVRIQTMPGFASTL 603
P P C PP TVP + + +R RP H +Q PG S L
Sbjct: 35 PLPRCRIIEPPRATVPEAVSNIIMSTPFNRVQRPKRH-VFNCLVQNEPGVLSRL 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,741
Number of Sequences: 5004
Number of extensions: 52150
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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