Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00104
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 475 PTLTVPSCTWRLCVGGIHRRHRPVAHGGAKV 567
           P  T+  C   +C+    RRHRPV     K+
Sbjct: 97  PNSTIAVC---VCMRKCPRRHRPVCASNGKI 124


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 81  GPRNGEFRAASSNEEN 34
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 392 PNESGSPSIGQTADALLADRHLKPFTTF 309
           P E G+P I  T       R+ +P TTF
Sbjct: 139 PREPGTPRINFTKLKRHHPRYKRPRTTF 166


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 618 SATLAEGARETRHGLDTDLSASMGDRAMSAMNSADAEPPGTRRYGK 481
           +ATLA G    R   ++  ++S  D    A  S   +PP   R+ K
Sbjct: 528 AATLAGGLCPHRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRK 573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,081
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)