Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00103
         (782 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   4e-04
UniRef50_Q82Y33 Cluster: HhH-GPD; n=3; Nitrosomonadaceae|Rep: Hh...    35   2.0  
UniRef50_A2SSI3 Cluster: HhH-GPD family protein; n=1; Methanocor...    35   2.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 47.6 bits (108), Expect = 4e-04
 Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +1

Query: 448 PWTQPTEFLAGSSQWVAIPIRGRFCKTLLSLGLVLEISSEFEP--VSSLPARAYL**PIP 621
           P TQP +FLAGSSQ       GRFC+ LL LGLVL  S    P  + + P  A +   +P
Sbjct: 70  PKTQPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYELPNRPRVAGIAFRLP 129

Query: 622 ANR 630
           ANR
Sbjct: 130 ANR 132


>UniRef50_Q82Y33 Cluster: HhH-GPD; n=3; Nitrosomonadaceae|Rep:
           HhH-GPD - Nitrosomonas europaea
          Length = 377

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -1

Query: 650 PVFFIPYLFAGIGYYRYARAGRELTGSNSEEISNTSPSESSVLQNLPRIGIAT 492
           PV  +  L++G+GYY  AR          E+ S   P +++ LQ LP IG +T
Sbjct: 82  PVGDVLTLWSGLGYYSRARNLHRAACVIMEQYSGVFPQDAATLQRLPGIGRST 134


>UniRef50_A2SSI3 Cluster: HhH-GPD family protein; n=1;
           Methanocorpusculum labreanum Z|Rep: HhH-GPD family
           protein - Methanocorpusculum labreanum (strain ATCC
           43576 / DSM 4855 / Z)
          Length = 292

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -1

Query: 620 GIGYYRYARAGRELTGSNSEEISNTSPSESSVLQNLPRIGIAT 492
           G+GY R A   ++L G    E + T P +  VL+NLP IG AT
Sbjct: 96  GMGYNRRALNLQKLAGVIVNEYNGTVPEDPLVLKNLPGIGPAT 138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,900,178
Number of Sequences: 1657284
Number of extensions: 11876130
Number of successful extensions: 25823
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25792
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)