Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00103
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    36   0.027
04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570     30   2.4  
04_03_0580 + 17487305-17487469,17487866-17488024                       28   7.3  

>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -2

Query: 595  GRVGSSRAQTQRKFLTLALARA-VFCKIYHGSESRPTEKTRRETQWAVSME*FALCRNRR 419
            GRV   R     + L L  ++   FC++Y GSE+   E TRR +   VS++  +      
Sbjct: 1015 GRVRRCRMHDIIRLLALRKSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPC 1074

Query: 418  IRSSRCFQVNRTFSSRQK*RNRFRYIQT 335
            +RS   F + R   S +     F+++ T
Sbjct: 1075 LRSLHVFSIYRRIDSLEAFLKSFKFLST 1102


>04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570
          Length = 440

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 711 CTYLKKVKRNTPNEFKILLHSCFFYSLPIR 622
           C  LK V RN PN   + LH C F   P R
Sbjct: 360 CYVLKSVLRNAPNLEHLRLHRCKFLGTPKR 389


>04_03_0580 + 17487305-17487469,17487866-17488024
          Length = 107

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 507 DRNRDPLRRPGEKLSGLCPWNNSLFVV 427
           D +R    R GEKL GLCP  ++ F V
Sbjct: 40  DASRPSFDRRGEKLIGLCPIRHNFFRV 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,221
Number of Sequences: 37544
Number of extensions: 299466
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)