Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00103
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33210| Best HMM Match : Spectrin (HMM E-Value=1.3e-12)              30   2.4  
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  

>SB_33210| Best HMM Match : Spectrin (HMM E-Value=1.3e-12)
          Length = 186

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -2

Query: 574 AQTQRKFLTLALARAVFCKIYHGSESRPTEKTRRETQWAVSME*FALCRNRRIRSSRCFQ 395
           A  +R    +A+A  +  + YH SE     K R    W + +    L + RR+R  +C Q
Sbjct: 41  AYEERVNAIVAVAEELHRENYHDSERIQVCKGRIIQLWELLL---VLIKQRRVRLEKCMQ 97

Query: 394 VNRTF 380
           + R F
Sbjct: 98  LQRVF 102


>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -2

Query: 610 ITDTRGRVGSSRAQTQRKFLTLALARAVFCKIYHG---SESRPTEKTRRETQWAVSME 446
           I  T+ +VG+   +T  K    +   A +CK Y G   S++RPT +T   T   V  E
Sbjct: 632 IAVTKVKVGNGSFKTLYKMKAKSAPHAKWCKCYKGIPRSDARPTPETSTSTVVVVDDE 689


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,565,047
Number of Sequences: 59808
Number of extensions: 380178
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)