Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00103
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   7.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.8  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 659 YCTPVFFIPYLFAGIGYYR 603
           +  P+F   ++F+ IGYY+
Sbjct: 57  FSLPIFGTRWIFSCIGYYK 75


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -3

Query: 537 REQCFAKS--TTDRNRDPLRRPGEKLSGLCPWNNSLFVVIEEFDRVGVFRLIGRFQVGKN 364
           +E+C  ++  TT+ N   ++     +  L P         +EF  +G F +    Q    
Sbjct: 376 KEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAV 435

Query: 363 NVIDFVTYKLT 331
            VI  VT+K T
Sbjct: 436 GVIKSVTFKDT 446


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 241 FLSCVIYLGIFIRRY 285
           ++ C++ LGI+ R Y
Sbjct: 202 YVPCIVMLGIYCRLY 216


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 322 IYLSKFVCNEIYYVIFADLKTSD*PEN 402
           +Y S      +YYV     +TSD  +N
Sbjct: 265 LYYSPVASTSLYYVNTEQFRTSDYQQN 291


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 445 IPWTQPTEFLAGSSQWVAIPIRGRFCKTLLSL 540
           I W+ P E + GSS  +A  +  R    ++S+
Sbjct: 616 IRWSYPGEEMGGSSGVLAKKVADRVSMLMISV 647


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 322 IYLSKFVCNEIYYVIFADLKTSD*PEN 402
           +Y S      +YYV     +TSD  +N
Sbjct: 265 LYYSPVASTSLYYVNTEQFRTSDYQQN 291


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 322 IYLSKFVCNEIYYVIFADLKTSD*PEN 402
           +Y S      +YYV     +TSD  +N
Sbjct: 265 LYYSPVASTSLYYVNTEQFRTSDYQQN 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,521
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)