Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00102X
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    28   0.59 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   1.4  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   5.5  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   7.3  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   7.3  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   7.3  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   7.3  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    24   9.6  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 48  IVECGHTFVGTSVNRPLVYHHDVQYSSKMFXK-RVENLHFSLPHVPSIFGRSIQG---IL 215
           +  C + F   S  R  +Y H  +  +    K  VENLH ++  + ++ G +++G   IL
Sbjct: 92  LYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENLH-TMDEL-NMTGNALKGSRPIL 149

Query: 216 AFDKTYSTA 242
           +FDKT+ TA
Sbjct: 150 SFDKTFDTA 158


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 191 EYGRYMRQAEMEVFNSLTEHFRAVLH 114
           E G Y+ +     +N + E FR +LH
Sbjct: 260 EIGAYLAEVSTRAYNGVFERFRTILH 285


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 188 YGRYMRQAEMEVFNSLTEHFRAVLHVMV 105
           YGR M+    E  + + +H+RAV   ++
Sbjct: 649 YGRLMQSEHTETSDMMEQHYRAVTQYLL 676


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 135 FXKRVENLHFSLPHVPSIFGRSIQGILAFDKT 230
           F  R  + H ++ H PS+FG+ I G L  D T
Sbjct: 282 FPHRNAHQHNAIAHNPSVFGKPI-GDLTSDPT 312


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 147 VENLHFSLPHVPSIFGRSIQGILA 218
           ++NL +SLP V SI   S+ GI++
Sbjct: 107 LQNLGYSLPIVGSISETSVSGIMS 130


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 134 HFRAVLHVMVVDQGPIDAGADESVTAFHDHRS 39
           H  ++LH  V+D   +  G+  S  AF + RS
Sbjct: 130 HIASLLHDDVIDHANVRRGSPSSNVAFGNRRS 161


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +3

Query: 108 HDVQYSSKMFXKRVENLHFSLPHVPSIFGRS 200
           H +++  K+  K+ + + +++ H+P ++GRS
Sbjct: 161 HFLKHYHKVRAKKYDEVLYAVYHLPLVYGRS 191


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 334 HFCLIIASAINRCDYKINLKNKNSRPVLLVPNSAPG 441
           +F   + SA N  D  + L  KN++P+L +  +  G
Sbjct: 80  NFYKALRSAANASDSTVRLSKKNNQPLLSLSTTWSG 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,157
Number of Sequences: 5004
Number of extensions: 37175
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)