Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00102X
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32270.1 68417.m04591 UDP-sugar transporter-related contains ...    28   2.6  
At4g08850.2 68417.m01455 leucine-rich repeat family protein / pr...    27   4.5  
At4g08850.1 68417.m01454 leucine-rich repeat family protein / pr...    27   4.5  
At1g01690.1 68414.m00087 expressed protein                             27   6.0  

>At4g32270.1 68417.m04591 UDP-sugar transporter-related contains
           weak similarity to Swiss-Prot:Q95YI5 UDP-sugar
           transporter UST74c [Drosophila melanogaster]
          Length = 364

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 127 RKCSVRELKTSISACLMYLPYSGGPFRAFWPSTRP 231
           +  +V ELK ++ A   +LP S GP +  W ST P
Sbjct: 246 KTATVGELKMAVEAAFSHLPIS-GPGKISWFSTTP 279


>At4g08850.2 68417.m01455 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1009

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 260 LGDVRRSSAIGLVEGQNALNG--PPEYGRYMRQAEMEVFNSL 141
           LGD+     + LVE  N LNG  P E GR  +  E+ ++++L
Sbjct: 162 LGDLSNLDTLHLVE--NKLNGSIPSEIGRLTKVTEIAIYDNL 201


>At4g08850.1 68417.m01454 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1045

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 260 LGDVRRSSAIGLVEGQNALNG--PPEYGRYMRQAEMEVFNSL 141
           LGD+     + LVE  N LNG  P E GR  +  E+ ++++L
Sbjct: 162 LGDLSNLDTLHLVE--NKLNGSIPSEIGRLTKVTEIAIYDNL 201


>At1g01690.1 68414.m00087 expressed protein
          Length = 742

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 21/81 (25%), Positives = 33/81 (40%)
 Frame = +1

Query: 79  PASIGPWSTTMTCSTARKCSVRELKTSISACLMYLPYSGGPFRAFWPSTRPIALLLRTSP 258
           P   GP +    CS        ++    S CL+     G  F   W + +    +LRT+ 
Sbjct: 327 PEQRGPVAKFEQCSVVIDSDEEDIDGGFS-CLINENTRGTNFE--WDAEKETERILRTAR 383

Query: 259 RRNRL*LRQSPHEERARIKNS 321
           R  R   ++SP EE    +N+
Sbjct: 384 RTKRKRKKRSPQEEEVDNENN 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,279,759
Number of Sequences: 28952
Number of extensions: 204175
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)