Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00099
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    86   2e-18
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    84   8e-18
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    26   2.4  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    25   4.1  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   4.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    24   7.2  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    24   7.2  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    24   7.2  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    24   7.2  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    24   9.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    24   9.5  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 85.8 bits (203), Expect = 2e-18
 Identities = 46/88 (52%), Positives = 56/88 (63%), Gaps = 5/88 (5%)
 Frame = +3

Query: 6   QSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG 185
           QSL SRGY+K ++ W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    G
Sbjct: 47  QSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AG 103

Query: 186 RPDAPARSAEDRSAYRRTP-----AAPG 254
           RP+   RS+   + YRR       AAPG
Sbjct: 104 RPEPRERSSAADAGYRRAEKKDDGAAPG 131


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 83.8 bits (198), Expect = 8e-18
 Identities = 42/77 (54%), Positives = 53/77 (68%)
 Frame = +3

Query: 6   QSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG 185
           QSL SRGY+K ++ W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    G
Sbjct: 47  QSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AG 103

Query: 186 RPDAPARSAEDRSAYRR 236
           RP+   R++ D + YRR
Sbjct: 104 RPEPRERASAD-AGYRR 119


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 223 DLSSAERAGASGRPTGPRRT 164
           DLSSAER  A GRP   + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 145 RLSVAGTISGGRCKNILKY 89
           R+   G+++GG CK  LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 117 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 224
           P I P ++   V   TVR G    PD P+ S   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 266 HEVQTRGSRSTSVCRSVLSRAGWGIRTT 183
           H ++ R S++   C S+ S+  W I  T
Sbjct: 659 HNIRNRESKTAKACHSISSQNRWVITGT 686


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -2

Query: 341  KQACHVHSLP*IQDQLSLDQHQPFYHEVQTRGSRSTSVCRSVLSRAGWGIRTTNRATAYC 162
            K+  H+     +QD L    H P   E++ R  R   V R  L+R        NR +  C
Sbjct: 1705 KEYVHLDDHLKLQDFLLSHLHNPLPFELEIRIKRKDGVYRWNLTRCTPTTNEKNRTSFLC 1764


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 229 YADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGGRCK 104
           + DL    RA +  RP  PR +  V   ++ +   I+  +C+
Sbjct: 3   FPDLLRCSRAVSLARPDLPRNSPDVYDTKIPILQAITAKKCQ 44


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 84  IEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 188
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 115 LLKLCLQHLSAQYVQRQY 168
           LLK+CL  +SA Y+   Y
Sbjct: 123 LLKVCLDEMSASYIDYGY 140


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 228 YRRTPAAPGLHLMIKRLMLVQAQLILNLRE 317
           YR T    G++  +KRL +  +Q+IL + +
Sbjct: 40  YRHTANVLGIYRSVKRLGIPDSQIILMIAD 69


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 193 SGRPTGPRRTVSVRTERLSVAGTISGGRCKNILK 92
           S R T  R   S+RT       T+SG R  +IL+
Sbjct: 310 SSRTTIRRTGASIRTIHRGKTSTLSGNRSHSILQ 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,059
Number of Sequences: 5004
Number of extensions: 23619
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)