Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00099
         (390 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                106   7e-24
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)                 27   5.4  
SB_14984| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-06)                 27   5.4  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             27   7.2  
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_3784| Best HMM Match : ICAM_N (HMM E-Value=4.1)                     26   9.5  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  106 bits (254), Expect = 7e-24
 Identities = 54/89 (60%), Positives = 63/89 (70%), Gaps = 4/89 (4%)
 Frame = +3

Query: 3   MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVRRGP 179
           +QSLKSRGYV+E+F W+H+YW LTNEGI YLR FLHLP EIVPATL+R V R ET R  P
Sbjct: 47  LQSLKSRGYVEEKFCWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETARPRP 106

Query: 180 VGR--PDAPARSAE-DRSAYRRTPAAPGL 257
            G   P  P    + DR +YRR P  PG+
Sbjct: 107 KGMDGPRGPGEGGDRDRESYRRGP-PPGV 134


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = +3

Query: 108 HLPPEIVPATLKRSVRTETVRRGPVGRPDAP----ARSAEDRSAYRRTPAAPG 254
           HL P ++   +  S+      RGP GRP  P     R    +   R  P +PG
Sbjct: 110 HLSPAVIRLCMGGSLTCPPGPRGPPGRPGHPGQKGTRGRRGQRGRRGNPGSPG 162


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 115  LLKLCLQHLSAQYVQRQYAVALLVVLMPQPALLRTDLHTDVLLLPLVCT 261
            LL    + L A+ V  QYA++  +  +  P  LRT+   D  L+P V T
Sbjct: 1694 LLVPATRTLIAKSVSNQYAISDTLNTLDDPPPLRTEYDVDRSLVPTVDT 1742


>SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)
          Length = 353

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 133 QHLSAQYVQRQYAVALLVVLMPQPALLRTDLHTDVLLLPLVC 258
           +HL+ +Y  R  A++ L+  +    LL  +L TD L   LVC
Sbjct: 60  RHLTIKYFVRNLAMSDLMSALVAILLLLAELTTDFLSSDLVC 101


>SB_14984| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-06)
          Length = 269

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 136 HLSAQYVQRQYAVALLVVLMPQPALLRTDLHTDVLLLPLVC 258
           HL+ +Y  R  A++ L+  +    LL  +L TD L   LVC
Sbjct: 61  HLTTKYFVRSLALSDLMSALVAIPLLLAELTTDFLSSDLVC 101


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 18  SRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 155
           SRG+VK+ +A+    W   +  + +L  +L L P+I   +  R++R
Sbjct: 143 SRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLAPDIASLSGIRTLR 187


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 93  LRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRT 239
           L  F+H  PE      +R  R+    R P GR ++ + + E RSA R+T
Sbjct: 146 LPTFIHNEPETTTNNKRRMHRSLKFFRRPFGRTESNSDTDEARSA-RKT 193


>SB_3784| Best HMM Match : ICAM_N (HMM E-Value=4.1)
          Length = 142

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 150 VRTETVRRGPVGRPDAPA 203
           + T  +  GPVG+PDAPA
Sbjct: 28  IDTVDLEGGPVGKPDAPA 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,736,646
Number of Sequences: 59808
Number of extensions: 187240
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)