Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00099
(390 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 82 2e-16
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 29 1.5
AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 27 3.6
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL117206-10|CAB60452.2| 258|Caenorhabditis elegans Hypothetical... 27 6.2
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 6.2
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 6.2
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 26 8.2
U97551-5|AAB52858.1| 169|Caenorhabditis elegans Groundhog (hedg... 26 8.2
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 81.8 bits (193), Expect = 2e-16
Identities = 46/87 (52%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPV 182
++SL SR VKEQFAWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V
Sbjct: 47 LKSLASRELVKEQFAWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED- 105
Query: 183 GRPDAPARSAEDRSAYRR---TPAAPG 254
P A DR AYR T A PG
Sbjct: 106 RAPRAAQGEKGDREAYRTEKVTEAGPG 132
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 174 GPVGRPDAPARSAEDRSAYRRTPAAP 251
G V RP APAR A + R PAAP
Sbjct: 33 GRVSRPAAPARGAPPAARGRPAPAAP 58
>AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical
protein Y53G8AM.8 protein.
Length = 789
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 162 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 248
T+ PVGR ++ ARS ++ SA R+ P +
Sbjct: 8 TIENTPVGRGNSGARSHKEPSAKRKKPTS 36
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 117 PEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 233
P ++P T SV+T+ +GPV P R AYR
Sbjct: 17 PSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 117 PEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 233
P ++P T SV+T+ +GPV P R AYR
Sbjct: 17 PSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56
>AL117206-10|CAB60452.2| 258|Caenorhabditis elegans Hypothetical
protein Y67A10A.2 protein.
Length = 258
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 239 STSVCRSVLSRAGWGIRTTNRATAYCLCTY 150
STS C S S+ + IRT + CL T+
Sbjct: 153 STSTCSSSTSKTPFSIRTPLNQASQCLSTF 182
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 129 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAP 251
P T+ S RT + R PA+S ED S PAAP
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAP 1472
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 129 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAP 251
P T+ S RT + R PA+S ED S PAAP
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAP 1428
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 174 GPVGRPDAPARSAEDRSAYRRTPAAPG 254
GP GRP P ED SA + P +PG
Sbjct: 108 GPPGRPGHPGHPGEDGSAGQ--PGSPG 132
>U97551-5|AAB52858.1| 169|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 4 protein.
Length = 169
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 130 LQHLSAQYVQRQYAVALLVVLMPQPALLRTD 222
+Q LS YVQR Y VA +VL P+ +L ++
Sbjct: 69 VQGLST-YVQRHYGVAYEIVLAPKGFILNSN 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,853,800
Number of Sequences: 27780
Number of extensions: 144703
Number of successful extensions: 525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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