Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00099
         (390 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...    87   3e-18
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    86   9e-18
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...    85   2e-17

>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
 Frame = +3

Query: 3   MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGP 179
           MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +       GP
Sbjct: 46  MQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGP 105

Query: 180 VG-RPDAPARSAEDRSAY 230
            G R   P RS  DR  +
Sbjct: 106 PGDRQRGPPRSDGDRPRF 123


>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 85.8 bits (203), Expect = 9e-18
 Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 6/90 (6%)
 Frame = +3

Query: 3   MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPV 182
           MQS KS+ YV+E FAW H+YW+LTNEGI++LR +L+LP EIVPATLK+  +      G  
Sbjct: 47  MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGG 106

Query: 183 G-RPDAPARS-----AEDRSAYRRTPAAPG 254
           G RP  P R        DR  YR  P + G
Sbjct: 107 GDRPRGPPRGDGERRFGDRDGYRGGPKSGG 136


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 45/92 (48%), Positives = 56/92 (60%), Gaps = 8/92 (8%)
 Frame = +3

Query: 3   MQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGP 179
           MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +       GP
Sbjct: 46  MQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGP 105

Query: 180 VG-RPDAPARSA------EDRSAYRRTPAAPG 254
            G R   P           DR  YR  P A G
Sbjct: 106 PGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGG 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,332,980
Number of Sequences: 28952
Number of extensions: 128361
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)