Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00098X
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    63   2e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    44   1e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    42   8e-05
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    38   0.001
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    37   0.002
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    37   0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    33   0.039
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    33   0.039
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    31   0.16 
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    29   0.37 
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    29   0.64 
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    29   0.64 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    28   1.1  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   3.4  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   3.4  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    26   4.5  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   6.0  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   7.9  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.9  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 30/62 (48%), Positives = 38/62 (61%)
 Frame = +1

Query: 265 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVHKV* 444
           +L PF K+FY  H  V  RS  EV EYR + E+ V G+ V  P+  FEEA FP+YV K  
Sbjct: 78  TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137

Query: 445 RQ 450
           +Q
Sbjct: 138 KQ 139



 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAYQ-TGSGKTL 551
           VK +G++ PTPIQ Q WP+AMSGR  +    TGSGKTL
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTL 174


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKTLG 554
           Q +K  GY +PTP+Q    PI  SGR  +A  QTGSGKT G
Sbjct: 182 QNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAG 222


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +3

Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTL 551
           +G+K   YKEPTPIQA  WP  ++GR  +   +TGSGKT+
Sbjct: 180 EGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTV 217


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTLGLHL 563
           + ++GY++PT IQAQ  P   SGR  +   +TGSGKT+   L
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLL 474


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 426 LCAQGVKTMGYKEPTPIQAQGWPIAMSGR--I*LAYQTGSGKTLGLHL 563
           LC +  + +G+K PTPIQ +  P+ ++ R  I LA QTGSGKT    L
Sbjct: 57  LC-EACEKLGFKTPTPIQQEAIPVVLNKRDVIGLA-QTGSGKTAAFAL 102


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 438 GVKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKTLGLHLAS 569
           G+   G++ P+PIQ +  PIA+SGR  LA  + G+GKT    + S
Sbjct: 58  GIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPS 102


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 32.7 bits (71), Expect = 0.039
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*L-AYQTGSGKTL 551
           + +K MG++  T IQ +  P  ++GR  L A +TGSGKTL
Sbjct: 102 KAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTL 141


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 32.7 bits (71), Expect = 0.039
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 453 GYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKT 548
           G+K PTPIQ +  P+ + GR  +   +TGSGKT
Sbjct: 88  GFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKT 120


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 441 VKTMGYKEPTPIQAQGWPIAMSGR-I*LAYQTGSGKTL 551
           V   G+K+ TP+QA   P+ +  + + +   TGSGKTL
Sbjct: 16  VAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTL 53


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +3

Query: 456 YKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKT 548
           +++PT +Q++  P+A+ G+  +A  +TGSGKT
Sbjct: 34  FEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 495 SASLELEWASVLCNPLSLHLVHIIRKICFFKVLNRIMNLNATYSYL 358
           S  LE E +  L NP SL L+  + ++C  + L++I  L  T S L
Sbjct: 408 SLKLEPETSIYLTNPGSLSLLEYLLRLCSLQELHQISCLEMTDSQL 453


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKT 548
           +K + YKEP+ IQ    P+ +  +  +   +TGSGKT
Sbjct: 264 LKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKT 300



 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 346 RNKHEVTVSGVEVHNPIQYFEEANFPDYVHKV 441
           +  + +++ G ++ NP++ +EEA  P  + KV
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKV 263


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = -1

Query: 259 NPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--T 86
           +P   S V PS   F  ++   S +S AT+AK  +      +S KF       +  +  T
Sbjct: 142 SPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVET 200

Query: 85  RHDYFSDLVEDVYLNYGFFLTAGS 14
            H+Y+++LV+    ++  F + GS
Sbjct: 201 EHEYYTELVKVKEASWPLFNSQGS 224


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 343 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVHKV*RQWVTKNRRPFKLKA 489
           Y N     + G EVHNP   FE     D  H+   +++ K ++   ++A
Sbjct: 290 YMNSESQNLLGDEVHNPFSDFETVE--DRAHEA--EFIEKQKKHLSIEA 334


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 325 PYEVEEYRNKHEVTVS 372
           PYE++ YRNKH   +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +1

Query: 325 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVHKV 441
           P+E  + + KH++ ++ V     +Q +E+  F + +  V
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKHV 294


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 253 LDSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQ 399
           +D V L PF K     FYDP P  LK + +E+        + V    +H P+Q
Sbjct: 111 IDVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 148 AEFVASSKFGTT-VSTAIIPITRHDYF 71
           A F  SS F T  V+ ++IPI R+DY+
Sbjct: 448 AFFTVSSLFFTRFVNESLIPILRNDYY 474


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +3

Query: 159 LGLATVAIDLEDLEALVGK---KNSLEGRTCDAQIGFCF 266
           LG   +++ +  + A++ K   +NS++  +C  Q+GFCF
Sbjct: 272 LGKFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,235
Number of Sequences: 5004
Number of extensions: 49063
Number of successful extensions: 168
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)