Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00098X
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 43 2e-04
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 41 6e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 39 0.003
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 38 0.008
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 37 0.010
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 35 0.054
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.072
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 34 0.072
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 34 0.072
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 33 0.13
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 2.7
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 29 3.6
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 4.7
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +1
Query: 247 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 426
P + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKT 548
++ + Y +PT IQ Q PIA+SGR + +TGSGKT
Sbjct: 532 IRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKT 568
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 319 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYV 432
R +EV+ YR ++TV+G V P+ FEE+ FPDY+
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYI 94
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 438 GVKTMGYKEPTPIQAQGWPIAMSGRI*L-AYQTGSGKTL 551
G+ G+ PT IQ QG P+A+SGR L A +TGSGKTL
Sbjct: 64 GLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTL 102
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
+ GY+ PTP+Q PI M+GR +A QTGSGKT
Sbjct: 494 ISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKT 530
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGR-I*LAYQTGSGKT 548
V +GYK+PTPIQ Q PI + R I +TGSGKT
Sbjct: 116 VDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKT 152
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
V+ YK+PTP+Q PI ++GR +A QTGSGKT
Sbjct: 726 VRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 762
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
V+ YK+PTP+Q PI ++GR +A QTGSGKT
Sbjct: 149 VRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 AQGVKTMGYKEPTPIQAQGWPIAMSGR-I*LAYQTGSGKTL 551
++ + GY PTPIQ Q P+ +SGR + + TGSGK L
Sbjct: 208 SKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGR-I*LAYQTGSGKTLGLHL 563
+ V +G+ PTPIQA P+A+ G+ + TG+GKT L
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFML 66
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 453 GYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
GYK+PTP+Q PI R +A QTGSGKT
Sbjct: 894 GYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKT 926
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 34.3 bits (75), Expect = 0.072
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGR 512
+K Y++PTPIQAQ P+ MSGR
Sbjct: 120 LKKNSYEKPTPIQAQAIPVIMSGR 143
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 259 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYR-NKHEVTVSGVEVHNPIQ 399
+V QPF K+FY P + K +P E +E+R + + V G P++
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVK 105
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 34.3 bits (75), Expect = 0.072
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 438 GVKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
G+ G+ +P+PIQ + P+A++GR LA + G+GKT
Sbjct: 61 GIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKT 98
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 34.3 bits (75), Expect = 0.072
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 438 GVKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
G+ G+ +P+PIQ + P+A++GR LA + G+GKT
Sbjct: 61 GIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKT 98
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 456 YKEPTPIQAQGWPIAMSGR--I*LAYQTGSGKTLGLHL 563
++ PTPIQ Q MSGR I LA +TGSGKTL L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLA-ETGSGKTLAYSL 128
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 277 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 423
F ++YD + V + S V+E R K+ + + G + PI+ F + N P
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLP 80
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*L-AYQTGSGKTL 551
QG+K MG+ T IQ + + GR L A +TGSGKTL
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTL 624
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +3
Query: 453 GYKEPTPIQAQGWPIAM--SGRI*LAYQTGSGKTL--GLHLASH 572
G+ +PTPIQ+ P A+ I A +TGSGKTL G+ + H
Sbjct: 149 GFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQH 192
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 209 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 99
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 337 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 429
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 325 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVHKV 441
P+E + + KH++ V+ VE + +Q +E F + + +V
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQV 290
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -3
Query: 275 GWSETESNLGVACS--ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFH 105
GW T + S AL+RI + ++ C +YRR CC L +W H +
Sbjct: 181 GWRVTLRVIAATTSQQALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTN 239
Query: 104 GYYSN 90
Y+S+
Sbjct: 240 TYWSS 244
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +1
Query: 382 VHNPIQYFEEANFPDYVHKV*RQWVTKNRRPFK 480
++NP+Q F E + + VH+V ++V K+++ +K
Sbjct: 536 INNPMQEFVEMHNVEKVHRVFDKYVKKHKKNYK 568
>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1485
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1
Query: 331 EVEEYRNKHEVTVSGVEVHNPIQYFEEANF---PDYVHKV*RQWVTKNRRPFK 480
+++ YR ++V+ SG E+ +Y + +NF PDY + +Q + + RPF+
Sbjct: 95 DLQSYRASYQVSSSGCELLEEDRYSKPSNFSSNPDYSYYDLQQKIIPS-RPFQ 146
>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 29
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 274 VGVKQNPIWASHVLPSREF 218
VGV+ WAS++LPSR+F
Sbjct: 10 VGVRDIEQWASNLLPSRQF 28
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,087,078
Number of Sequences: 59808
Number of extensions: 347920
Number of successful extensions: 1062
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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