Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00098X
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       44   1e-06
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 43.6 bits (98), Expect = 1e-06
 Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +3

Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
           +K  GYK+PTP+Q    PI M+GR  +A  QTGSGKT
Sbjct: 211 IKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKT 247



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 358 EVTVSGVEVHNPIQYFEEANFPDYV 432
           +V VSG  V  PI+ FE A   + V
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIV 207


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 259 NPIWASHVLPSREFFFP 209
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 259 NPIWASHVLPSREFFFP 209
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 536 TRLVRQLNSSRHSYR 492
           T L++ L+SSR  YR
Sbjct: 375 TNLIQSLDSSRRQYR 389


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 536 TRLVRQLNSSRHSYR 492
           T L++ L+SSR  YR
Sbjct: 343 TNLIQSLDSSRRQYR 357


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 316 KRSPYEVEEYRNKHEVTV 369
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 164 TETNYRRICCLLQIWNHRFHGYYSN 90
           T  N RR    ++ W H F   Y N
Sbjct: 416 TVENNRRNPWFVEFWEHHFQCRYPN 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,745
Number of Sequences: 438
Number of extensions: 3214
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)