Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00098X
(574 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 64 8e-11
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 53 2e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 53 2e-07
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 51 5e-07
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 51 5e-07
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 51 5e-07
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 48 6e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 47 8e-06
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 46 2e-05
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 45 4e-05
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 43 1e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 4e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 41 5e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 41 7e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 40 0.001
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 38 0.004
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 37 0.008
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 36 0.025
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 36 0.025
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 35 0.034
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 35 0.034
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 35 0.044
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 34 0.059
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 34 0.077
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 34 0.077
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 34 0.077
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 34 0.077
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 33 0.10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 33 0.14
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 33 0.18
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 31 0.55
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 31 0.55
At2g25460.1 68415.m03049 expressed protein 30 0.95
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 29 1.7
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 28 5.1
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.1
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.1
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 6.7
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 27 6.7
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 27 8.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 63.7 bits (148), Expect = 8e-11
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = +1
Query: 250 RLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 429
+LD L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 430 V 432
V
Sbjct: 110 V 110
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTL 551
VK G+ EPTPIQ+QGWP+AM GR + +TGSGKTL
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTL 151
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +1
Query: 247 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 426
P+ + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 427 YV 432
+
Sbjct: 175 NI 176
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTL 551
+ + +G+ EPTPIQAQGWP+A+ GR + +TGSGKTL
Sbjct: 178 EAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 217
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +1
Query: 247 PRLDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 426
P+ + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 427 YV 432
+
Sbjct: 175 NI 176
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTL 551
+ + +G+ EPTPIQAQGWP+A+ GR + +TGSGKTL
Sbjct: 178 EAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 217
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 51.2 bits (117), Expect = 5e-07
Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTLG 554
V + G+ PTPIQAQ WPIAM GR +A +TGSGKTLG
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLG 211
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 298 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 423
P P+ S E Y +HE+TVSG +V P+ FE FP
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFP 166
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 51.2 bits (117), Expect = 5e-07
Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTLG 554
V + G+ PTPIQAQ WPIAM GR +A +TGSGKTLG
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLG 211
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 298 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 423
P P+ S E Y +HE+TVSG +V P+ FE FP
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFP 166
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 51.2 bits (117), Expect = 5e-07
Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTLG 554
V + G+ PTPIQAQ WPIAM GR +A +TGSGKTLG
Sbjct: 173 VLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLG 211
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 298 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 423
P P+ S E Y +HE+TVSG +V P+ FE FP
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFP 166
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 47.6 bits (108), Expect = 6e-06
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +1
Query: 259 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYV 432
S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQI 239
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 417 FS*LCAQGVKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKT 548
FS +K Y++PT IQ Q PI +SGR + +TGSGKT
Sbjct: 235 FSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKT 279
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTLG 554
V + G+ P+PIQAQ WPIAM R +A +TGSGKTLG
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG 282
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 337 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 426
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/35 (62%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +3
Query: 453 GYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTLG 554
G+ PTPIQAQ WPIA+ R +A +TGSGKTLG
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLG 488
Score = 34.3 bits (75), Expect = 0.059
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 280 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 423
NK+ PH P V SP E+ YR +HEVT +G + P FE + P
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLP 443
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTLGLHL 563
+K + Y++P PIQAQ PI MSGR + +TGSGKTLG L
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVL 452
Score = 36.7 bits (81), Expect = 0.011
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 262 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEE 411
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQ 400
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTLGLHL 563
+K + Y++P PIQ Q PI MSGR + +TGSGKTLG L
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVL 585
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 262 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEE 411
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQ 533
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 444 KTMGYKEPTPIQAQGWPIAMSGR-I*LAYQTGSGKTLGLHL 563
+T+GYK+PTPIQA P+A++GR + + TGSGKT L
Sbjct: 183 ETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFAL 223
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGR--I*LAYQTGSGKTL 551
+K G PTPIQ QG P+ +SGR I +A+ TGSGKTL
Sbjct: 112 LKDKGIMHPTPIQVQGLPVVLSGRDMIGIAF-TGSGKTL 149
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 289 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 423
++ P V K S +++ R + +TV+G ++ PI+ F + FP
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFP 105
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/34 (61%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 450 MGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
+G+KEPTPIQ Q PI +SGR A TGSGKT
Sbjct: 159 LGFKEPTPIQRQAIPILLSGRECFACAPTGSGKT 192
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGR--I*LAYQTGSGKTL 551
+K G +PTPIQ QG P+ ++GR I +A+ TGSGKTL
Sbjct: 161 LKEKGIVQPTPIQVQGLPVILAGRDMIGIAF-TGSGKTL 198
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
++T GY PTPIQ Q P A++G+ LA TGSGKT
Sbjct: 125 LETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKT 161
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKT 548
+K GYK PTPIQ + P+ +SG +A +TGSGKT
Sbjct: 43 IKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKT 79
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.5 bits (78), Expect = 0.025
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 438 GVKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
G+ G++ P+PIQ + PIA++GR LA + G+GKT
Sbjct: 145 GIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT 182
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.5 bits (78), Expect = 0.025
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 438 GVKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
G+ G++ P+PIQ + PIA++GR LA + G+GKT
Sbjct: 145 GIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT 182
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.1 bits (77), Expect = 0.034
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +3
Query: 450 MGYKEPTPIQAQGWPIAMSGR-I*LAYQTGSGKTL 551
MG++ PT +QAQ P+ +SGR + + TG+GKT+
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTI 82
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 35.1 bits (77), Expect = 0.034
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 456 YKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTL 551
+++P+PIQ+ WP + GR + +TGSGKTL
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTL 166
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = +3
Query: 450 MGYKEPTPIQAQGWPIAMSGR--I*LAYQTGSGKT 548
+G+K P+ IQA+ P A+ G+ I LA QTGSGKT
Sbjct: 27 LGWKNPSKIQAEALPFALEGKDVIGLA-QTGSGKT 60
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 34.3 bits (75), Expect = 0.059
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
++ Y +PTP+Q PI + GR +A QTGSGKT
Sbjct: 174 IRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKT 210
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.9 bits (74), Expect = 0.077
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
+G+ G+++P+PIQ + PIA++G LA + G+GKT
Sbjct: 137 KGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.9 bits (74), Expect = 0.077
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
+G+ G+++P+PIQ + PIA++G LA + G+GKT
Sbjct: 137 KGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 33.9 bits (74), Expect = 0.077
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
+G+ G+++P+PIQ + PIA++G LA + G+GKT
Sbjct: 167 RGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 205
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 33.9 bits (74), Expect = 0.077
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 444 KTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKTLGLHL 563
K +G ++PTP+Q P ++GR L QTGSGKT L
Sbjct: 74 KELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFAL 114
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 411 SKFS*LCAQGVKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKT 548
SK + + V+ GYK+P+PIQ P+ + R + +TGSGKT
Sbjct: 318 SKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKT 364
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 456 YKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
Y +PTP+Q PI +GR +A QTGSGKT
Sbjct: 166 YVKPTPVQRNAIPILAAGRDLMACAQTGSGKT 197
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*L-AYQTGSGKTL 551
+ +K MG+ T IQA+ P M G L A +TGSGKTL
Sbjct: 167 KSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTL 206
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
++ Y PTP+Q PI ++ R +A QTGSGKT
Sbjct: 166 IRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKT 202
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 441 VKTMGYKEPTPIQAQGWPIAMSGRI*LA-YQTGSGKT 548
++ Y PTP+Q PI ++ R +A QTGSGKT
Sbjct: 166 IRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKT 202
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 0.95
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -3
Query: 212 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 96
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 435 QGVKTMGYKEPTPIQAQGWPIAMSGRI*LAY-QTGSGKT 548
+GV GYK+P+ IQ + + GR +A Q+G+GKT
Sbjct: 35 RGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT 73
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 426 LCAQGVKTMGYKEPTPIQAQGWPIAM-SGRI*L-AYQTGSGKTLGLHL 563
L + + + +KEPT IQ + +A G+ + A +TGSGKTL L
Sbjct: 200 LLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGL 247
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 283 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVHK 438
K D H +L P+E + + KH+V + VE ++ E+ F + V K
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 283 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVHK 438
K D H +L P+E + + KH+V + VE ++ E+ F + V K
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 93 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 239
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 27.5 bits (58), Expect = 6.7
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = -1
Query: 262 QNPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPIT 86
QN +W VL + F F K R ++S A R ++ VA + T+ ++ +
Sbjct: 352 QNCLWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASS 411
Query: 85 RH--DYFSDLVEDVYLNYGFFLTAGSTL 8
H YF + E ++ Y +G L
Sbjct: 412 FHMSTYFDRIQESLFTQYVIETLSGPPL 439
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 274 VGVKQNPIWASHVLPSREFFF 212
VGVK+ W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,868
Number of Sequences: 28952
Number of extensions: 242970
Number of successful extensions: 793
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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