Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00097
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    29   1.1  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   4.3  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    26   5.7  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    26   7.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   7.6  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    26   7.6  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 684 IHENTHLFT*FLN*QVTIIVSSSNVKYILNVCLVIVYNMT 803
           I E  + F   +N   TII + SN  Y+L+  L ++ NMT
Sbjct: 218 IDEKDYSFVKMINFAETIIANKSNEGYLLSRILFLLMNMT 257


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -3

Query: 812 HMSGHIVNNHQTNIKYVFNI*RRYNNGDLLI*ELCKQMSIFMNYIITKDATCTNLY*LKL 633
           H+  HI ++   N+ Y+F   R Y   D+   E+C      +++  T D T  NL   K 
Sbjct: 165 HVFSHIRDSLLQNLLYMFTKKRLYEPTDMKYVEVCVDSITSLSFDKT-DMTKPNLSSYKT 223

Query: 632 FI-TKIT*NTNIFF 594
           F  T    NT  F+
Sbjct: 224 FFETNFIENTKNFY 237


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 552 DRSFTLVNWQRTQWKKYICVLR 617
           DR+  LV  Q++  K+Y+CVLR
Sbjct: 112 DRATRLVKSQQSAGKEYVCVLR 133


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 185 IKADCASLPFIPTRLGSVKEVSARI*EPRVSWSERG 292
           + AD A +  +  + G  KEV+ RI E +V W +RG
Sbjct: 42  LNAD-AHVIVVSPKAGLCKEVAWRIQEKQVEWRDRG 76


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 74  YFVLRLSRTLCGGVCIWTQLE---MLSGKVFVCIVLVTVWIKADCASLPFIPTRLGSVKE 244
           Y+ LRL R   G   ++  L+     S K+F C V+ T W+  +   LP    R  S + 
Sbjct: 264 YWQLRLER---GYTQVYADLQNRLCTSSKLFGCPVVCTNWLLNNKQHLPIQCKRFRSERR 320

Query: 245 VSAR 256
            +AR
Sbjct: 321 ANAR 324


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 162 QTKTFPLNISN*VQIQTPPHSVRDS 88
           Q  +FPL   N  Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -1

Query: 322 HTAAVAPPRGPSLGP-AHPGLSYPCA 248
           HT  V PP  P +GP   PG    CA
Sbjct: 128 HTIVVTPPPQPGMGPYIGPGADAICA 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,565,257
Number of Sequences: 5004
Number of extensions: 76187
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)