Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00097
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1406 - 26854845-26855606 33 0.21
07_03_0544 + 19309026-19310105 30 2.0
05_07_0162 + 28090579-28091343 29 3.5
09_01_0141 + 2094010-2094526,2094839-2095269 29 4.6
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 29 6.0
03_02_0457 + 8638318-8638336,8640394-8640497,8640613-8640778,864... 29 6.0
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 29 6.0
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 29 6.0
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 28 8.0
02_05_0912 - 32689665-32690007,32690117-32690275,32690380-326905... 28 8.0
>08_02_1406 - 26854845-26855606
Length = 253
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 295 REGVPPPLCAGRCVAPPAGPVCAFDAAGTRGHSLLYVNSRLFR 423
R+GVPP C G+CV G C AG G+++ + LFR
Sbjct: 196 RDGVPPCCCCGQCV---CGGGCFVGCAGLAGNAMGHFIHELFR 235
>07_03_0544 + 19309026-19310105
Length = 359
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 237 SKKSAHGYESPG*AGPSEGPRGGATAAVCRAVRGPAG 347
+K+S G +PG GP GGA AAV A G AG
Sbjct: 101 NKRSRSGGAAPGGGVGRGGPGGGAAAAVSSAGGGAAG 137
>05_07_0162 + 28090579-28091343
Length = 254
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 310 PPLCAGRCVAPPAGPV 357
PPL GRCV PP PV
Sbjct: 52 PPLAGGRCVGPPLYPV 67
>09_01_0141 + 2094010-2094526,2094839-2095269
Length = 315
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -3
Query: 425 TRNSLEFT*SSECPRVPAASKAHTGPAGGATHRPAHSGG 309
TRN LE + SS ++ A A TG A G T P HS G
Sbjct: 205 TRNELESSSSSTPVQMYEAGWAPTGDAPGWTQAPRHSIG 243
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 398 SSECPRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPG 267
++ C R AA G G + HRP P LAR++ G
Sbjct: 143 ATTCSRCVAADATGCGSLGASRHRPWRPRAAAPRSALARSTFRG 186
>03_02_0457 +
8638318-8638336,8640394-8640497,8640613-8640778,
8641403-8641467
Length = 117
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 213 SFQRDWGASKKSAHGYESPG*AGPSEGPRGGATAAVCRAVRGPAGRTSVR 362
S+++ +G+ KK G PG GP GP GG +RGP + +R
Sbjct: 47 SYRKGYGSGKKWDGG---PGGGGPGGGPYGGGRGG-GGGLRGPRTLSDIR 92
>01_06_1762 -
39716723-39717016,39717256-39717332,39717452-39717498,
39717953-39718053,39718271-39718360,39718556-39720133
Length = 728
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 225 DWGASKKSAHGYESPG*AGPSEGPRGGATAAVCRAVRGPAGRTSV 359
D A + H + +PG G G GG A +RG A R V
Sbjct: 2 DASAGSSAPHSHGNPGKQGGGGGGGGGRGKAPAAEIRGEAARDDV 46
>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 540 WAYKYKFHKNGLNLNHIFLISKLFSKLPNL 451
+A+ +F K GL HI LI K SKL NL
Sbjct: 1117 YAHVTEFQKRGLPHEHILLIMKPGSKLTNL 1146
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 374 AASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 273
AAS A TG A +P SGG T +L SS
Sbjct: 140 AASSASTGNAASTAAKPTASGGATHRLSLISASS 173
>02_05_0912 -
32689665-32690007,32690117-32690275,32690380-32690573,
32690669-32690861,32690956-32692169
Length = 700
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 377 PAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGA 264
PA S + P G AT+R SGGG S T + + G+
Sbjct: 92 PANSTSPEPPGGAATNRRGSSGGGGFSATGGQAGTNGS 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,001,016
Number of Sequences: 37544
Number of extensions: 515775
Number of successful extensions: 1912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1911
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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