Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00097
(835 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 34 0.12
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.66
SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6) 31 1.5
SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0) 30 2.0
SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_35205| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_45686| Best HMM Match : T-box (HMM E-Value=0) 29 3.5
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 4.6
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 6.1
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072) 28 8.1
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1) 28 8.1
SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 303 GATAAVCRAVRG-PAGRTSVRL*CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
G VCR VR P+ V CS TF T C +E +C ES V G C
Sbjct: 67 GKPQCVCRDVRECPSSMDPV---CSTTGETFITKCHMEVEACTESRSMMVARRGEC 119
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 303 GATAAVCRAVRG-PAGRTSVRL*CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
G VCR VR P+ V CS TF T C +E +C ES V G C
Sbjct: 138 GKPQCVCRDVRECPSSMDPV---CSTTGETFITKCHMEVEACTESRSMMVARRGEC 190
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +3
Query: 303 GATAAVCRAVRGPAGRTSVRL*CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
G CR GR C + ++ T C ++A +CRES V G C
Sbjct: 283 GTLTCTCRKEENCPGRADYV--CGSDGNSYFTECHMDATACRESRDITVKHKGPC 335
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +3
Query: 297 RGGATAAVCRAVRGPAGRTSVRL*CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
RGGA + P + V C N +T+ C L+ SC E +V G C
Sbjct: 948 RGGAQCVCPQTSECPVASSFV---CGSNGKTYTNECLLKVDSCAEQKEISVKHKGAC 1001
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +3
Query: 297 RGGATAAVCRAVRGPAGRTSVRL*CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
+G AVC R R C + RT+ LC L+ C+ V G C
Sbjct: 426 QGLTRQAVCACPRFEDCPRDFRPVCGSDLRTYVNLCRLQVEVCQTGRAVTVLRQGAC 482
>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -2
Query: 444 RNTCFRDTKQPRVHIE*RMSSRSGCIKGAHWSCRRGHAPPCTQRRWHPLAD 292
+N R TK+P + R S C +G+H SC +G P C Q +HP D
Sbjct: 73 KNPIPRVTKEPHPSCDQR--SHPSCDQGSHPSCDQGSHPSCDQ-EYHPSCD 120
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 32.3 bits (70), Expect = 0.50
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
C+ N +T++ C+++A +C T V S G C
Sbjct: 1608 CASNGKTYSNRCDMDADACIRDTKLTVVSQGAC 1640
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
C + +T+ CE+ A +C +ST V G C
Sbjct: 1307 CGTDGKTYGNKCEMRASACLKSTMVTVAYPGEC 1339
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 303 GATAAVCRAVRGPAGRTSVRL*CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
G C + A R+ V C + T++ C L +C+ES V S G C
Sbjct: 1434 GVPRCECPMFKCSANRSDV---CGSDRMTYSNECTLTQTACQESKNLTVVSQGPC 1485
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 31.9 bits (69), Expect = 0.66
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
C ++ RT+++ C ++A +C+ T AV G+C
Sbjct: 815 CGQDGRTYSSTCAMDARACQAQTSIAVKHPGLC 847
>SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6)
Length = 153
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 166 SFSDCMDKSRLRQSTVHSNEIGERQRSQRTDMRAPGELVRARVREGV 306
SFS +R RQ+ H +G +S++ D+ PGE R G+
Sbjct: 45 SFSSLTSLARKRQNRTHDFSLGVAAKSEKVDLIFPGENKSIRGDHGI 91
>SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 1142
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Frame = -2
Query: 429 RDTKQPRVHIE*RMSSRSGCIKGAHWSCRRGHAPPCTQRRWHPLADPRSDQLTRGSHIRA 250
+D ++ VHI+ + + +K A+ RR PPC +++ PL D+ +
Sbjct: 879 QDLEKHLVHIKKELQATKHALKVANDKLRRKDLPPCEEKQ--PL---NRDRRVDNDDVHR 933
Query: 249 LTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTFPLNISN*VQI-QTPPHSVRDSLNTKY 73
+ ++T +++ N + + H + KT P N + T P V D L+ ++
Sbjct: 934 INAVTRHDIIDANNK---TLACHDNPTAGENKTQPANKHPQTETHNTGPALVTDYLDREF 990
Query: 72 ERCSF 58
+F
Sbjct: 991 HNTAF 995
>SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
C + RT+++ C L SC Y++ +G C
Sbjct: 233 CGTDGRTYSSFCALREHSCNVGRLYSIKHIGRC 265
>SB_35205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 297 ADPRSDQLTRGSHIRALTSLTLPNLVGMN 211
A P+ + TRG R+ S+T+PN G+N
Sbjct: 104 ASPQPAKFTRGRRFRSSGSITIPNAPGLN 132
>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
Length = 947
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 433 LSRHETASSSHRVANVLAFRLHQR--RTLVLPAGPRTALHTAAVAP 302
L+RH S+ N+ R+ QR R L L GP LHT+ P
Sbjct: 6 LNRHLVDSNKINSDNITISRVQQREERNLALAQGPAARLHTSVSRP 51
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 373 LHQRRTLVLPAGPRTALHTAAVAP 302
L Q+ T + PA PR+AL TA V+P
Sbjct: 105 LQQQSTPIAPARPRSALQTAPVSP 128
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
C+ N T+ + C LE SC+ Y + G C
Sbjct: 1874 CASNNLTYMSKCHLERASCQLGRYLTIKQKGKC 1906
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
C + +T+ C LE SC+ +T +V G C
Sbjct: 54 CGSDGKTYPNPCALEVESCKTNTRISVIKKGSC 86
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 315 AVCRAVRGPAGRTSVRL*CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
AVC P+ V C + +T+ CEL +C+ + V SL C
Sbjct: 5617 AVCMCQSCPSINKPV---CGSDGKTYNNECELRQYACKSDSLITVASLSSC 5664
>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
Length = 196
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
CS F LCEL +CR V S+G C
Sbjct: 26 CSVYVLEFNNLCELHKFACRYEIPIGVASMGPC 58
>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
Length = 556
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 304 PPRGPSLGPAHPGLSYPCADFFDAPQSRWN 215
P + P+L PA+P + + FF AP+ WN
Sbjct: 48 PLQIPTLPPANPSQYFSTSFFFWAPKRTWN 77
>SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 304 PPRGPSLGPAHPGLSYPCADFFDAPQSRWN 215
P + P+L PA+P + + FF AP+ WN
Sbjct: 265 PLQIPTLPPANPSQYFSTSFFFWAPKRTWN 294
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,871,673
Number of Sequences: 59808
Number of extensions: 594019
Number of successful extensions: 1722
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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