Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00097
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 31 1.0
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 31 1.3
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 31 1.3
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 31 1.3
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 31 1.3
AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical... 31 1.3
Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p... 29 3.1
U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical pr... 29 4.1
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 28 7.2
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 28 7.2
U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of ... 28 9.5
AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium cha... 28 9.5
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 31.1 bits (67), Expect = 1.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
C + T++ LCEL+ +C+ S+G+C
Sbjct: 820 CGSDGTTYSNLCELKMFACKHQIDVVPVSMGIC 852
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
C+ N TF CE++ SC + V G C
Sbjct: 413 CATNGETFDNECEMKKKSCETKSMIKVKHQGTC 445
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 365 KAHTGPAGGATHRPAHSGGGTPSRTLARTSS 273
++HT +GGAT S G+P+ +LART S
Sbjct: 398 QSHTASSGGATTITLGSPNGSPTSSLARTQS 428
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 365 KAHTGPAGGATHRPAHSGGGTPSRTLARTSS 273
++HT +GGAT S G+P+ +LART S
Sbjct: 411 QSHTASSGGATTITLGSPNGSPTSSLARTQS 441
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 365 KAHTGPAGGATHRPAHSGGGTPSRTLARTSS 273
++HT +GGAT S G+P+ +LART S
Sbjct: 410 QSHTASSGGATTITLGSPNGSPTSSLARTQS 440
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 365 KAHTGPAGGATHRPAHSGGGTPSRTLARTSS 273
++HT +GGAT S G+P+ +LART S
Sbjct: 413 QSHTASSGGATTITLGSPNGSPTSSLARTQS 443
>AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical
protein C18G1.1 protein.
Length = 136
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 188 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 84
+S+ LK Y +KP R TE++ +H+RT + I+L
Sbjct: 45 ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79
>Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical
protein R107.6 protein.
Length = 1020
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 157 CLYSFSDCMDKSRLRQSTVHSNEIGER--QRSQRTDMRAPGELVRARVREGVPPPLCAGR 330
C+ S+S DK++ RQ + E ++ +RT + GEL++A + + P AGR
Sbjct: 169 CIASYSTSKDKNQRRQLCALLEIVLEHWNEKIKRTVLPQIGELIKAAICDADPETRVAGR 228
>U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical
protein C50F2.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 125 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 24
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
>U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical
protein C43E11.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 125 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 24
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 369 CSRNARTFATLCELEAVSCRESTYYAVTSLGVC 467
C+ N TF CE++ SC + V G C
Sbjct: 405 CATNGETFDNECEMKKKSCETKSMIKVKHQGTC 437
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.2
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Frame = +1
Query: 85 KTISYAVRWCLYLDSVGNVKRKGFCLYSFSDCMDKSRLRQSTVHSNEIGE-RQRSQRTDM 261
KT+ Y +G V G+ ++ D++ NE G +RT
Sbjct: 4 KTLVYGASVLSGFAILGCVFTVGYIFNDINEFYDQTMETMDEFKLNERGAWHGMVERT-- 61
Query: 262 RAPGELVRARVREGVPPPLCAGR---CVAPPAGPVCAFDAAGTRGHS 393
RAP E++ R + C + C A P GP A A G GH+
Sbjct: 62 RAPSEILFGRAKRQAGQCNCGAQSSGCPAGPPGPPGAPGAPGDDGHA 108
>U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of
potassium channelsprotein 16 protein.
Length = 555
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 337 PRTALHTAAVAPPRGPSLGPAHPGLSYPCADFFDAPQSR 221
PR+ +H+ P P + P P +P DAP R
Sbjct: 357 PRSIIHSPCSTRPSNPPMSPPSPREDHPFIFKMDAPAPR 395
>AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium
channel subunit n2P16 protein.
Length = 555
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 337 PRTALHTAAVAPPRGPSLGPAHPGLSYPCADFFDAPQSR 221
PR+ +H+ P P + P P +P DAP R
Sbjct: 357 PRSIIHSPCSTRPSNPPMSPPSPREDHPFIFKMDAPAPR 395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,912,283
Number of Sequences: 27780
Number of extensions: 449984
Number of successful extensions: 1412
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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