Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00097
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.65 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.86 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -3

Query: 344 GGATHRPAHSGGGTPS---RTLARTSSPGA 264
           G   H P H+  G PS    T+A TS+PG+
Sbjct: 209 GYGRHLPGHAQMGRPSYTTATMATTSTPGS 238


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 125 TQLEMLSGKVFVCIVLVTVWIKADCA-SLPFIPTR 226
           +QL + SG VFV I++  VW+  D A ++   PTR
Sbjct: 767 SQLIICSGLVFVQILINGVWMIIDPAKAMHHYPTR 801


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +2

Query: 314 RCVQGGAWPRRQDQCAPLMQPEREDIRYSM*TRGCFVSRKHVLRRHKFGS 463
           RC  GG     + QC  L + E+  +  S  T     S K  + R+   S
Sbjct: 298 RCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNS 347


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 527 ISSIKMD*ILIIFS*FLNYSANSQ 456
           ISSI +D I +IF+ F ++S + Q
Sbjct: 174 ISSIPLDYIFLIFNQFQDFSESFQ 197


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 527 ISSIKMD*ILIIFS*FLNYSANSQ 456
           ISSI +D I +IF+ F ++S + Q
Sbjct: 174 ISSIPLDYIFLIFNQFQDFSESFQ 197


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 527 ISSIKMD*ILIIFS*FLNYSANSQ 456
           ISSI +D I +IF+ F ++S + Q
Sbjct: 174 ISSIPLDYIFLIFNQFQDFSESFQ 197


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 252 HGYESPG*AGPSEGPRGGATAAVCRAVRGP 341
           HG + P  AG S+G  G  +A +   +  P
Sbjct: 331 HGLQPPDLAGTSQGSAGLPSAILAMRLSHP 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,042
Number of Sequences: 438
Number of extensions: 5879
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)