Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00096
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   123   3e-29
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    31   0.14 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.2  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   3.0  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   5.2  
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    26   6.8  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    26   6.8  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   9.0  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    25   9.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.0  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  123 bits (296), Expect = 3e-29
 Identities = 58/82 (70%), Positives = 68/82 (82%)
 Frame = +1

Query: 256 DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAG 435
           DP  LD+ K+L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGTK FMEA  +G
Sbjct: 53  DPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASG 112

Query: 436 ADISMIGQFGVGFYSSYLVADR 501
           ADISMIGQFGVGFYS+YLVAD+
Sbjct: 113 ADISMIGQFGVGFYSAYLVADK 134



 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 41/50 (82%), Positives = 46/50 (92%)
 Frame = +2

Query: 104 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 253
           +  ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL
Sbjct: 2   SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSL 51



 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
 Frame = +3

Query: 513 SKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVLHVKEDLAEFMXXXXXXXXXXXX 689
           SKHNDDEQY+WESSAGGSFTV  D+  P L RGT+I L +KED  +++            
Sbjct: 139 SKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKEDQLQYLEEKTIKDTVKKH 198

Query: 690 SQFIGYPIKLMVEKNAKKEL 749
           S+FI YPI+L+V +  +KE+
Sbjct: 199 SEFISYPIQLVVTREVEKEV 218


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
 Frame = +2

Query: 176 SNKEIFLRELISNSSDALDKIRYESLRIRQNSI-VAKSCTSRSFPTRTRALLRSSI---- 340
           S+   +L +L+++  D L K+R E LRIR+  I V  S       T TRA+++  +    
Sbjct: 325 SSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAVVKECLRLRP 384

Query: 341 PVLV*P 358
           PVL+ P
Sbjct: 385 PVLMVP 390


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -3

Query: 413 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 255
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
 Frame = +2

Query: 191 FLRELISNSSDALDKIRYESLRI-----RQNSIVAKSCTS 295
           F+R+++   +D L+K+R++SL +       +S+V ++ TS
Sbjct: 224 FIRKVVLTKADGLEKLRFQSLLVSLTATNNSSVVFEAATS 263


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 390 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 283
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -2

Query: 360 LGHTNTGIDDRKSALVLVGNDLDVQLFATIEF*RILRDSYLILSKASDELEISSR 196
           LG    G+D+    + LV N+ +      +E  RI  + YL+     D   +  R
Sbjct: 36  LGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVR 90


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -2

Query: 360 LGHTNTGIDDRKSALVLVGNDLDVQLFATIEF*RILRDSYLILSKASDELEISSR 196
           LG    G+D+    + LV N+ +      +E  RI  + YL+     D   +  R
Sbjct: 36  LGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVR 90


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 294 QDHSQQERGHSYDHRYRYWYDQGRFGEQF 380
           +DH++++  H+     +Y YD  R  E +
Sbjct: 603 KDHTKEQAWHAMQQGIKYMYDNWRIWENY 631


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 158 IINTFYSNKEIFLRELISNSSDALDKIRYESLRIRQNSIV 277
           II+TF   KE  L  +I    D L  +R      R+N IV
Sbjct: 198 IIDTFLQEKEPSLHVIIEPHPDVLKHMRKNGWMDRENVIV 237


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 245  ESLRIRQNSIVAKSCTSRSFPTRTRALLR-SSIP 343
            E+LR+  + I   SC+SR+F      +   SSIP
Sbjct: 2617 ENLRLAASLITTDSCSSRTFQNALSVMFHLSSIP 2650


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 256  DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLG 384
            DPSK     ++Y K+   + +  L   D+GI ++   L+  +G
Sbjct: 2472 DPSKAVRKPKIYSKVSTEERDFNLEQFDSGIDLSVKFLLEGIG 2514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,204
Number of Sequences: 5004
Number of extensions: 69988
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)