Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00096
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      110   1e-24
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    79   4e-15
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       70   2e-12
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)            29   3.1  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        29   4.1  
SB_33463| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   5.5  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)                   28   9.5  
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)                     28   9.5  
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)                   28   9.5  
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)                 28   9.5  
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)                    28   9.5  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  110 bits (265), Expect = 1e-24
 Identities = 49/80 (61%), Positives = 61/80 (76%)
 Frame = +3

Query: 513 SKHNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXXXXS 692
           +KHNDDEQY+WES+AGGSFTV+ DSGEPLGRGTKIVL++KED  E++            S
Sbjct: 88  TKHNDDEQYIWESAAGGSFTVKRDSGEPLGRGTKIVLYLKEDQTEYLEEKRIKEIVKKHS 147

Query: 693 QFIGYPIKLMVEKNAKKELS 752
           QFIGYP+ L+V+K   KE+S
Sbjct: 148 QFIGYPLSLLVQKERDKEVS 167



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 21/25 (84%), Positives = 25/25 (100%)
 Frame = +1

Query: 427 QAGADISMIGQFGVGFYSSYLVADR 501
           +AGADISMIGQFGVGFYS+YLVA++
Sbjct: 59  KAGADISMIGQFGVGFYSAYLVAEK 83


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 41/86 (47%), Positives = 62/86 (72%), Gaps = 3/86 (3%)
 Frame = +1

Query: 253 QDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 432
           +D S+ ++  E+ I+   ++  GT TI D G+GMT+ +L+++LG IAKSG+K FME L+ 
Sbjct: 109 KDVSETETSLEIMIET--DQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFMEKLKN 166

Query: 433 GADIS---MIGQFGVGFYSSYLVADR 501
            A  S   +IGQFGVGFYS+++VAD+
Sbjct: 167 EARSSHENIIGQFGVGFYSTFMVADK 192



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +3

Query: 525 DDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXXXXSQFIG 704
           + + Y W S   GS+     +G  + RGTK+VLH+KED   F             S F+G
Sbjct: 203 NSQGYFWTSDGSGSYEYAEANG--VARGTKLVLHLKEDCKRFAMKTAVEDIVQRYSNFVG 260

Query: 705 YPIKL 719
           +PI L
Sbjct: 261 FPIYL 265



 Score = 35.9 bits (79), Expect = 0.036
 Identities = 16/61 (26%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
 Frame = +2

Query: 65  AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 241
           +V+ + E  + +  E  +     ++ + + L++++  +   ++F+RE+ISN+SDAL+K+R
Sbjct: 43  SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102

Query: 242 Y 244
           +
Sbjct: 103 H 103


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 35/56 (62%), Positives = 42/56 (75%)
 Frame = +2

Query: 86  EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 253
           +M+    + E   FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR  SL
Sbjct: 68  QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIRLMSL 123



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +3

Query: 513 SKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRGTKIVLHVKEDLAEFMXXXXXXXXXXXX 689
           SK+NDD+QY+WES A  SF++  D  G  L RGT I LH+KE+  +++            
Sbjct: 183 SKNNDDKQYIWESDA-SSFSISEDPRGPTLKRGTTISLHLKEEARDYLEPETIKDLVKKY 241

Query: 690 SQFIGYPIKLMVEKNAKKE 746
           SQFI +PI L   K  + E
Sbjct: 242 SQFINFPIFLWTSKTTEVE 260



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 31/52 (59%), Positives = 36/52 (69%)
 Frame = +1

Query: 256 DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 411
           D +  DSG EL IKI  +K    L + DTGIGMTK +L+ NLGTIAKSGT A
Sbjct: 125 DKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGTIA 176


>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +2

Query: 32  PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 211
           PS   V    KA  K  +E ET+P E+   +F+ +   ++        S+  +FLR  I 
Sbjct: 71  PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123

Query: 212 NSSDALDKI 238
             SDA +KI
Sbjct: 124 LRSDASEKI 132


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +1

Query: 262 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 432
           +K+  G+E+   +  ++NE     ++  +G ++ D++ N+G      T++ +E  +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +3

Query: 285 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 452
           AV   H+   RGHS+      W       G F + FG+    W    + G+S  CR    
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204

Query: 453 WTVRCWLLLQ 482
           W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214


>SB_33463| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 390

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 743 FFRVLFNHQLDWVANELGMFLYDLFDFV 660
           +  +L    +DW+A  LG+FL  L  F+
Sbjct: 107 YIEILITRNVDWIAGSLGVFLCKLVLFI 134


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 604 RPRGSPLSGRTVNEPPAEDSHTYCSSSLCLE*QSRGQR 491
           RPRG    GR   EPP +           LE +SRG+R
Sbjct: 619 RPRGRDDGGRPSREPPRDQHRRPYDDPEGLERESRGER 656


>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 289

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 127 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 5
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 127 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 5
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 540 VWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAE 647
           VW SSA G+  ++ +  E L   T   +  K+++AE
Sbjct: 528 VWSSSASGANMIQGEPAEHLAEATAAPITKKDEIAE 563


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 127 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 5
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 479 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 517


>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
          Length = 306

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 127 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 5
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 412

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 127 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 5
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
          Length = 1366

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 80  PEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLRI 259
           P+E  T+  EV+   F+ ++ Q     +  +  + E    E +S S DA+  + YE+LR 
Sbjct: 388 PQEESTEGIEVDPSRFEVDVEQ-----VRPWQKSDET---ESVSQSDDAIALMVYENLRA 439

Query: 260 RQ 265
           R+
Sbjct: 440 RK 441


>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
          Length = 246

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 127 EREGFNLRWLCLHFFRHFL--YCFLFNSHKMTRGFLTHVFQSA 5
           ERE  +L W C HF  + L     L   HK     LTHVF +A
Sbjct: 116 EREALSLVWACEHFQMYLLGTKFKLITDHKP----LTHVFNNA 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,965,125
Number of Sequences: 59808
Number of extensions: 541449
Number of successful extensions: 1559
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)