Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00095
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    32   0.083
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    28   1.3  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.4  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   7.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   9.5  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   9.5  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3

Query: 120 KRSKLVLPEPQVTDQELQQVVKLG 191
           KR KL LP P V+  EL +VVKLG
Sbjct: 308 KRRKLNLPSPTVSQDELDKVVKLG 331



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 653 SVRNALQSLPVPRNDYEIVVP 715
           ++R  L  LP P+NDYE++ P
Sbjct: 466 ALRELLAKLPKPKNDYELMEP 486


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 626 INFKNKPKTSVRNALQSLPVPRNDYEIV 709
           IN K+  KTS+RN LQ+L    ND + +
Sbjct: 410 INVKDGKKTSIRNQLQNLCFKDNDIKYI 437


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 514  NTPGHGNSQLGLTPGLRDKLNINPEDRVNGGDTPQISHQLQKQAKNISQK 663
            N  GH      L+P +R+KL  +P  R + G +P++ + L    + +  +
Sbjct: 953  NQQGHEQYNFSLSPSIRNKL--SPICRPSQGSSPKLKNNLSNTEERMGSR 1000


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 398 HESDFSGALPQNQVVATPNTVLATPFRSSRSEVST 502
           H  DF+ AL    +VA+P+T +A  +RSS+   ST
Sbjct: 83  HGQDFNDAL----LVASPDTSVALRYRSSQLSSST 113


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 323 LMEAQNVMALTHVDTPLKGGLNTPLHESDFSGALPQNQVVATPNT-VLATPFR-SSRSEV 496
           ++EA  ++ +  + TP++    TP+ E+      P  + + TP    + TP     RS V
Sbjct: 186 MVEAMTILPMAAMTTPMEETTTTPMEETT---TTPMVETMITPMVEAMTTPTEVVGRSMV 242

Query: 497 ST 502
           ST
Sbjct: 243 ST 244


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 126 CVFLPEHHLVAWLVAHHFPCVVLTF 52
           C+F P H L+ W  +      +LTF
Sbjct: 165 CLFSPAHALILWFYSTSLRVTLLTF 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,985
Number of Sequences: 5004
Number of extensions: 58691
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)