BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS00095 (798 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 74 2e-13 10_01_0316 + 3479574-3482679,3482766-3483127 29 4.3 09_05_0013 + 20067115-20067183,20067585-20067691,20067905-200680... 29 4.3 02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 29 4.3 05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963... 29 5.7 01_06_1207 + 35414292-35414918 29 5.7 04_04_1471 - 33823654-33824085 28 7.5 03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685... 28 7.5 10_01_0318 + 3493913-3496976,3497064-3497392 28 9.9 09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632... 28 9.9 08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 9.9 >04_03_0501 + 16593710-16593886,16595255-16595311,16595748-16597469, 16599045-16599326,16599521-16599637,16599655-16600365 Length = 1021 Score = 73.7 bits (173), Expect = 2e-13 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 7/156 (4%) Frame = +2 Query: 314 DRILMEAQNVMALTHVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSE 493 D I+MEA+N+ L TPL GG N LH SDFSG P+ + + TPN +ATP +S Sbjct: 381 DAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPRKKEMQTPNP-MATPL-ASPGP 438 Query: 494 VSTP--GVLTLQDMAIVSLG*PQACEINLISTLKTE*MVVTLLKFPINFKNKPKTSVRNA 667 +TP G+ +D + L P++ + E + K + + + + S+R+ Sbjct: 439 GATPRIGMTPSRDGSSFGLT-PKSTPFRDELRINEEVDMQDTAKLELRRQAELRKSLRSG 497 Query: 668 LQSLPVPRNDYEIVVP-----EQEAGEDKDDSAASR 760 S+P P+N+Y+IV+P E+E E+K + + R Sbjct: 498 FASIPQPKNEYQIVMPPITEEEKEEAEEKIEDMSDR 533 Score = 40.3 bits (90), Expect = 0.002 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Frame = +3 Query: 78 DVPQAMLQGDA-----PARKRSKLVLPEPQVTDQELQQVVKLGXXXXXXXXXXXXXXXXX 242 D P A++Q + KRSKL+LP PQ++D EL+++ K+G Sbjct: 291 DAPAAIMQANRLNDPEAVTKRSKLMLPPPQISDHELEEIAKMGNAGDPSLVEELGEGSTA 350 Query: 243 TDALSRSTRSHPR 281 T AL S PR Sbjct: 351 TRALLSSYSQTPR 363 >10_01_0316 + 3479574-3482679,3482766-3483127 Length = 1155 Score = 29.1 bits (62), Expect = 4.3 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +2 Query: 395 LHESDFSGALPQNQVVATPNTVLATPFRSSRSE-VSTPGVLTLQDMAIVSLG 547 L+ ++F+G LPQ + T + +L F +R PG+ T +A++ LG Sbjct: 462 LYNNNFTGELPQALGMNTTSGLLRVDFTRNRFRGAIPPGLCTRGQLAVLDLG 513 >09_05_0013 + 20067115-20067183,20067585-20067691,20067905-20068037, 20068163-20068306,20068415-20068573,20068710-20068783, 20068907-20068982,20069100-20069155,20069346-20069433, 20069508-20069648,20069737-20069886,20070165-20070398 Length = 476 Score = 29.1 bits (62), Expect = 4.3 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = -1 Query: 690 LGTGRDCKAFLTDVFGLFLKLMGNLRSVTTIHSVFRVDIKFISQAWGQPKLTIAMSWSVK 511 +G G+DC AF ++V + + ++ VT++ ++VD K I + + I S S+K Sbjct: 39 IGLGQDCMAFCSEVEDV---ISMSMTVVTSLLKKYKVDPKLIGRLEVGSETVIDKSKSIK 95 Query: 510 T 508 T Sbjct: 96 T 96 >02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931, 8137117-8137271,8137363-8137451,8137623-8137967, 8139046-8139169,8139424-8139581,8139673-8139757, 8140094-8140306,8141314-8141375,8141466-8141951, 8142472-8142568 Length = 883 Score = 29.1 bits (62), Expect = 4.3 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +2 Query: 350 LTHVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSEVSTP 505 L+++++PL+G + LH+ DF + V + +PF S RS ++ P Sbjct: 95 LSNLNSPLRGS-DVHLHDMDFDTMSEPSFVTTDSYNLDTSPFLSDRSNMNKP 145 >05_05_0322 + 24094831-24094992,24095147-24095216,24096184-24096307, 24096403-24096502,24096598-24096825,24096916-24097041, 24097092-24097376,24097490-24097648,24097751-24097929, 24098078-24098210 Length = 521 Score = 28.7 bits (61), Expect = 5.7 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = +1 Query: 13 ILRKRRENVARISKS*--NNARKMMCHKPCYKVMLRQENAA 129 +L+K +EN +K N ARK KP KV+ R ENAA Sbjct: 139 LLKKAQENAVAANKIVVQNPARKEPAPKPAKKVVPRPENAA 179 >01_06_1207 + 35414292-35414918 Length = 208 Score = 28.7 bits (61), Expect = 5.7 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = -1 Query: 627 MGNLRSVTTIHSVFRVDIKFISQAWGQPKLTIAMSWSVKTPGVDTSLRDDLNGVARTV 454 + N RSVTT+H + + +++ + +W VDT +R +L +ARTV Sbjct: 135 LANYRSVTTVHEAAAPAMAVVVESY-VVDVPPGNTWEETRVFVDTIVRCNLQSLARTV 191 >04_04_1471 - 33823654-33824085 Length = 143 Score = 28.3 bits (60), Expect = 7.5 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 308 VRACAEQWRARV*ARTARQSVGSGHRTARRGLASR 204 +R +WR+R AR A ++V +GH G ASR Sbjct: 13 LRQTLRRWRSRAAARAAAEAVPAGHVAVCVGGASR 47 >03_06_0071 + 31465707-31466237,31467455-31468075,31468438-31468520, 31468895-31468979 Length = 439 Score = 28.3 bits (60), Expect = 7.5 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = +1 Query: 529 GNSQLGLTPGLRDKLNINP-EDRV-NGGDTPQISHQL-QKQAKNISQKRFAISA 681 G+ LG PG+RD + P E RV +GGD I QL + A KR ++A Sbjct: 139 GDGALGFRPGVRDVDLVGPVEVRVASGGDGGSIELQLPSRNATYAGLKRVIVAA 192 >10_01_0318 + 3493913-3496976,3497064-3497392 Length = 1130 Score = 27.9 bits (59), Expect = 9.9 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = +2 Query: 356 HVD-TPLKGGLNTPLHESDFSGALPQN-QVVATPNTVLATPFRSSRSEVSTPGVLTLQDM 529 H D T ++ N L+ ++F+G LPQ + TP + R+ PG+ T + Sbjct: 434 HSDITQMRNLTNITLYNNNFTGELPQELGLNTTPGLLHIDLTRNHFRGAIPPGLCTGGQL 493 Query: 530 AIVSLG 547 A++ LG Sbjct: 494 AVLDLG 499 >09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995, 6320811-6320893,6320977-6321074,6321384-6321461, 6321891-6322000,6322083-6322180,6323199-6323296, 6323403-6323463,6323688-6323831,6324103-6324206, 6324634-6324787,6324860-6324879,6324967-6325029, 6326521-6326632,6326711-6326796,6326872-6326899, 6327242-6327293,6329034-6329250 Length = 727 Score = 27.9 bits (59), Expect = 9.9 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = -3 Query: 751 GRIVLIFTSLLLRHHDFIVISRNRQRLQS 665 G + ++FT ++++H+ F +S N QR S Sbjct: 338 GIVSILFTGMVMKHYTFSNLSNNSQRFVS 366 >08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966, 27203525-27203545,27204305-27204344,27204345-27204792, 27204866-27204964,27205071-27205394,27205446-27205574, 27205657-27205875,27205976-27206194,27206436-27206669, 27206773-27206943,27207466-27207577,27207955-27208010, 27208083-27208181,27208901-27209134,27209258-27209311, 27209363-27209422 Length = 1955 Score = 27.9 bits (59), Expect = 9.9 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +3 Query: 684 FREMTMK--SWCRSKRLVKIRTIRPQVVSVEDQADAG 788 F MTM SW RL K+R++ V+S+EDQ + G Sbjct: 1750 FDSMTMPLGSWSSLMRL-KVRSLANMVISLEDQQNQG 1785 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,870,247 Number of Sequences: 37544 Number of extensions: 428883 Number of successful extensions: 1189 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1185 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2162420256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -