Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00095
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 74 2e-13
10_01_0316 + 3479574-3482679,3482766-3483127 29 4.3
09_05_0013 + 20067115-20067183,20067585-20067691,20067905-200680... 29 4.3
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 29 4.3
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963... 29 5.7
01_06_1207 + 35414292-35414918 29 5.7
04_04_1471 - 33823654-33824085 28 7.5
03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685... 28 7.5
10_01_0318 + 3493913-3496976,3497064-3497392 28 9.9
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632... 28 9.9
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 9.9
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 73.7 bits (173), Expect = 2e-13
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Frame = +2
Query: 314 DRILMEAQNVMALTHVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSE 493
D I+MEA+N+ L TPL GG N LH SDFSG P+ + + TPN +ATP +S
Sbjct: 381 DAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPRKKEMQTPNP-MATPL-ASPGP 438
Query: 494 VSTP--GVLTLQDMAIVSLG*PQACEINLISTLKTE*MVVTLLKFPINFKNKPKTSVRNA 667
+TP G+ +D + L P++ + E + K + + + + S+R+
Sbjct: 439 GATPRIGMTPSRDGSSFGLT-PKSTPFRDELRINEEVDMQDTAKLELRRQAELRKSLRSG 497
Query: 668 LQSLPVPRNDYEIVVP-----EQEAGEDKDDSAASR 760
S+P P+N+Y+IV+P E+E E+K + + R
Sbjct: 498 FASIPQPKNEYQIVMPPITEEEKEEAEEKIEDMSDR 533
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 78 DVPQAMLQGDA-----PARKRSKLVLPEPQVTDQELQQVVKLGXXXXXXXXXXXXXXXXX 242
D P A++Q + KRSKL+LP PQ++D EL+++ K+G
Sbjct: 291 DAPAAIMQANRLNDPEAVTKRSKLMLPPPQISDHELEEIAKMGNAGDPSLVEELGEGSTA 350
Query: 243 TDALSRSTRSHPR 281
T AL S PR
Sbjct: 351 TRALLSSYSQTPR 363
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 395 LHESDFSGALPQNQVVATPNTVLATPFRSSRSE-VSTPGVLTLQDMAIVSLG 547
L+ ++F+G LPQ + T + +L F +R PG+ T +A++ LG
Sbjct: 462 LYNNNFTGELPQALGMNTTSGLLRVDFTRNRFRGAIPPGLCTRGQLAVLDLG 513
>09_05_0013 +
20067115-20067183,20067585-20067691,20067905-20068037,
20068163-20068306,20068415-20068573,20068710-20068783,
20068907-20068982,20069100-20069155,20069346-20069433,
20069508-20069648,20069737-20069886,20070165-20070398
Length = 476
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = -1
Query: 690 LGTGRDCKAFLTDVFGLFLKLMGNLRSVTTIHSVFRVDIKFISQAWGQPKLTIAMSWSVK 511
+G G+DC AF ++V + + ++ VT++ ++VD K I + + I S S+K
Sbjct: 39 IGLGQDCMAFCSEVEDV---ISMSMTVVTSLLKKYKVDPKLIGRLEVGSETVIDKSKSIK 95
Query: 510 T 508
T
Sbjct: 96 T 96
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 350 LTHVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSEVSTP 505
L+++++PL+G + LH+ DF + V + +PF S RS ++ P
Sbjct: 95 LSNLNSPLRGS-DVHLHDMDFDTMSEPSFVTTDSYNLDTSPFLSDRSNMNKP 145
>05_05_0322 +
24094831-24094992,24095147-24095216,24096184-24096307,
24096403-24096502,24096598-24096825,24096916-24097041,
24097092-24097376,24097490-24097648,24097751-24097929,
24098078-24098210
Length = 521
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 13 ILRKRRENVARISKS*--NNARKMMCHKPCYKVMLRQENAA 129
+L+K +EN +K N ARK KP KV+ R ENAA
Sbjct: 139 LLKKAQENAVAANKIVVQNPARKEPAPKPAKKVVPRPENAA 179
>01_06_1207 + 35414292-35414918
Length = 208
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 627 MGNLRSVTTIHSVFRVDIKFISQAWGQPKLTIAMSWSVKTPGVDTSLRDDLNGVARTV 454
+ N RSVTT+H + + +++ + +W VDT +R +L +ARTV
Sbjct: 135 LANYRSVTTVHEAAAPAMAVVVESY-VVDVPPGNTWEETRVFVDTIVRCNLQSLARTV 191
>04_04_1471 - 33823654-33824085
Length = 143
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 308 VRACAEQWRARV*ARTARQSVGSGHRTARRGLASR 204
+R +WR+R AR A ++V +GH G ASR
Sbjct: 13 LRQTLRRWRSRAAARAAAEAVPAGHVAVCVGGASR 47
>03_06_0071 +
31465707-31466237,31467455-31468075,31468438-31468520,
31468895-31468979
Length = 439
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 529 GNSQLGLTPGLRDKLNINP-EDRV-NGGDTPQISHQL-QKQAKNISQKRFAISA 681
G+ LG PG+RD + P E RV +GGD I QL + A KR ++A
Sbjct: 139 GDGALGFRPGVRDVDLVGPVEVRVASGGDGGSIELQLPSRNATYAGLKRVIVAA 192
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 356 HVD-TPLKGGLNTPLHESDFSGALPQN-QVVATPNTVLATPFRSSRSEVSTPGVLTLQDM 529
H D T ++ N L+ ++F+G LPQ + TP + R+ PG+ T +
Sbjct: 434 HSDITQMRNLTNITLYNNNFTGELPQELGLNTTPGLLHIDLTRNHFRGAIPPGLCTGGQL 493
Query: 530 AIVSLG 547
A++ LG
Sbjct: 494 AVLDLG 499
>09_02_0253 -
6319198-6319240,6319364-6319552,6319650-6319995,
6320811-6320893,6320977-6321074,6321384-6321461,
6321891-6322000,6322083-6322180,6323199-6323296,
6323403-6323463,6323688-6323831,6324103-6324206,
6324634-6324787,6324860-6324879,6324967-6325029,
6326521-6326632,6326711-6326796,6326872-6326899,
6327242-6327293,6329034-6329250
Length = 727
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 751 GRIVLIFTSLLLRHHDFIVISRNRQRLQS 665
G + ++FT ++++H+ F +S N QR S
Sbjct: 338 GIVSILFTGMVMKHYTFSNLSNNSQRFVS 366
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 684 FREMTMK--SWCRSKRLVKIRTIRPQVVSVEDQADAG 788
F MTM SW RL K+R++ V+S+EDQ + G
Sbjct: 1750 FDSMTMPLGSWSSLMRL-KVRSLANMVISLEDQQNQG 1785
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,870,247
Number of Sequences: 37544
Number of extensions: 428883
Number of successful extensions: 1189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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