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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00095
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974...    74   2e-13
10_01_0316 + 3479574-3482679,3482766-3483127                           29   4.3  
09_05_0013 + 20067115-20067183,20067585-20067691,20067905-200680...    29   4.3  
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813...    29   4.3  
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963...    29   5.7  
01_06_1207 + 35414292-35414918                                         29   5.7  
04_04_1471 - 33823654-33824085                                         28   7.5  
03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685...    28   7.5  
10_01_0318 + 3493913-3496976,3497064-3497392                           28   9.9  
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    28   9.9  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    28   9.9  

>04_03_0501 +
           16593710-16593886,16595255-16595311,16595748-16597469,
           16599045-16599326,16599521-16599637,16599655-16600365
          Length = 1021

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
 Frame = +2

Query: 314 DRILMEAQNVMALTHVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSE 493
           D I+MEA+N+  L    TPL GG N  LH SDFSG  P+ + + TPN  +ATP  +S   
Sbjct: 381 DAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPRKKEMQTPNP-MATPL-ASPGP 438

Query: 494 VSTP--GVLTLQDMAIVSLG*PQACEINLISTLKTE*MVVTLLKFPINFKNKPKTSVRNA 667
            +TP  G+   +D +   L  P++        +  E  +    K  +  + + + S+R+ 
Sbjct: 439 GATPRIGMTPSRDGSSFGLT-PKSTPFRDELRINEEVDMQDTAKLELRRQAELRKSLRSG 497

Query: 668 LQSLPVPRNDYEIVVP-----EQEAGEDKDDSAASR 760
             S+P P+N+Y+IV+P     E+E  E+K +  + R
Sbjct: 498 FASIPQPKNEYQIVMPPITEEEKEEAEEKIEDMSDR 533



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +3

Query: 78  DVPQAMLQGDA-----PARKRSKLVLPEPQVTDQELQQVVKLGXXXXXXXXXXXXXXXXX 242
           D P A++Q +         KRSKL+LP PQ++D EL+++ K+G                 
Sbjct: 291 DAPAAIMQANRLNDPEAVTKRSKLMLPPPQISDHELEEIAKMGNAGDPSLVEELGEGSTA 350

Query: 243 TDALSRSTRSHPR 281
           T AL  S    PR
Sbjct: 351 TRALLSSYSQTPR 363


>10_01_0316 + 3479574-3482679,3482766-3483127
          Length = 1155

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 395 LHESDFSGALPQNQVVATPNTVLATPFRSSRSE-VSTPGVLTLQDMAIVSLG 547
           L+ ++F+G LPQ   + T + +L   F  +R      PG+ T   +A++ LG
Sbjct: 462 LYNNNFTGELPQALGMNTTSGLLRVDFTRNRFRGAIPPGLCTRGQLAVLDLG 513


>09_05_0013 +
           20067115-20067183,20067585-20067691,20067905-20068037,
           20068163-20068306,20068415-20068573,20068710-20068783,
           20068907-20068982,20069100-20069155,20069346-20069433,
           20069508-20069648,20069737-20069886,20070165-20070398
          Length = 476

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = -1

Query: 690 LGTGRDCKAFLTDVFGLFLKLMGNLRSVTTIHSVFRVDIKFISQAWGQPKLTIAMSWSVK 511
           +G G+DC AF ++V  +   +  ++  VT++   ++VD K I +     +  I  S S+K
Sbjct: 39  IGLGQDCMAFCSEVEDV---ISMSMTVVTSLLKKYKVDPKLIGRLEVGSETVIDKSKSIK 95

Query: 510 T 508
           T
Sbjct: 96  T 96


>02_02_0236 +
           8135641-8135795,8136167-8136557,8136640-8136931,
           8137117-8137271,8137363-8137451,8137623-8137967,
           8139046-8139169,8139424-8139581,8139673-8139757,
           8140094-8140306,8141314-8141375,8141466-8141951,
           8142472-8142568
          Length = 883

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 350 LTHVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSEVSTP 505
           L+++++PL+G  +  LH+ DF      + V      +  +PF S RS ++ P
Sbjct: 95  LSNLNSPLRGS-DVHLHDMDFDTMSEPSFVTTDSYNLDTSPFLSDRSNMNKP 145


>05_05_0322 +
           24094831-24094992,24095147-24095216,24096184-24096307,
           24096403-24096502,24096598-24096825,24096916-24097041,
           24097092-24097376,24097490-24097648,24097751-24097929,
           24098078-24098210
          Length = 521

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 13  ILRKRRENVARISKS*--NNARKMMCHKPCYKVMLRQENAA 129
           +L+K +EN    +K    N ARK    KP  KV+ R ENAA
Sbjct: 139 LLKKAQENAVAANKIVVQNPARKEPAPKPAKKVVPRPENAA 179


>01_06_1207 + 35414292-35414918
          Length = 208

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 627 MGNLRSVTTIHSVFRVDIKFISQAWGQPKLTIAMSWSVKTPGVDTSLRDDLNGVARTV 454
           + N RSVTT+H      +  + +++    +    +W      VDT +R +L  +ARTV
Sbjct: 135 LANYRSVTTVHEAAAPAMAVVVESY-VVDVPPGNTWEETRVFVDTIVRCNLQSLARTV 191


>04_04_1471 - 33823654-33824085
          Length = 143

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 308 VRACAEQWRARV*ARTARQSVGSGHRTARRGLASR 204
           +R    +WR+R  AR A ++V +GH     G ASR
Sbjct: 13  LRQTLRRWRSRAAARAAAEAVPAGHVAVCVGGASR 47


>03_06_0071 +
           31465707-31466237,31467455-31468075,31468438-31468520,
           31468895-31468979
          Length = 439

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 529 GNSQLGLTPGLRDKLNINP-EDRV-NGGDTPQISHQL-QKQAKNISQKRFAISA 681
           G+  LG  PG+RD   + P E RV +GGD   I  QL  + A     KR  ++A
Sbjct: 139 GDGALGFRPGVRDVDLVGPVEVRVASGGDGGSIELQLPSRNATYAGLKRVIVAA 192


>10_01_0318 + 3493913-3496976,3497064-3497392
          Length = 1130

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 356 HVD-TPLKGGLNTPLHESDFSGALPQN-QVVATPNTVLATPFRSSRSEVSTPGVLTLQDM 529
           H D T ++   N  L+ ++F+G LPQ   +  TP  +     R+       PG+ T   +
Sbjct: 434 HSDITQMRNLTNITLYNNNFTGELPQELGLNTTPGLLHIDLTRNHFRGAIPPGLCTGGQL 493

Query: 530 AIVSLG 547
           A++ LG
Sbjct: 494 AVLDLG 499


>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 751 GRIVLIFTSLLLRHHDFIVISRNRQRLQS 665
           G + ++FT ++++H+ F  +S N QR  S
Sbjct: 338 GIVSILFTGMVMKHYTFSNLSNNSQRFVS 366


>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
            27203525-27203545,27204305-27204344,27204345-27204792,
            27204866-27204964,27205071-27205394,27205446-27205574,
            27205657-27205875,27205976-27206194,27206436-27206669,
            27206773-27206943,27207466-27207577,27207955-27208010,
            27208083-27208181,27208901-27209134,27209258-27209311,
            27209363-27209422
          Length = 1955

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 684  FREMTMK--SWCRSKRLVKIRTIRPQVVSVEDQADAG 788
            F  MTM   SW    RL K+R++   V+S+EDQ + G
Sbjct: 1750 FDSMTMPLGSWSSLMRL-KVRSLANMVISLEDQQNQG 1785


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,870,247
Number of Sequences: 37544
Number of extensions: 428883
Number of successful extensions: 1189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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