Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00095
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical p...    81   1e-15
Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical p...    81   1e-15
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    28   6.7  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    28   6.7  

>Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
 Frame = +2

Query: 314 DRILMEAQNVMALTHVDTPLKGGLNTPLHESDF-SGALPQNQVVATPNTVL----ATPFR 478
           D + +E +N+MAL + ++ LKGGLNTPLHES+   G LP  +V ATPNTVL    ATP  
Sbjct: 352 DTVQLELENLMALQNTESALKGGLNTPLHESELGKGVLPTPKVAATPNTVLHAIAATPGT 411

Query: 479 SSRSEVSTPGVLTLQDMAIVSLG*PQACEINLISTLKTE*MVVTLLKFPINFKNKPKTSV 658
            S+   STPG       ++ +        IN       E +  + L        + K S+
Sbjct: 412 QSQFPGSTPGGFATPAGSVAATPFRDQMRIN-------EEIAGSAL--------EQKASL 456

Query: 659 RNALQSLPVPRNDYEIVVPEQEAGEDKDDSAASRFRGG 772
           + AL SLP P+ND+E+V P+ +  E   +  +++   G
Sbjct: 457 KRALASLPTPKNDFEVVGPDDDEVEGAVEDESNQDEDG 494



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/25 (72%), Positives = 25/25 (100%)
 Frame = +3

Query: 117 RKRSKLVLPEPQVTDQELQQVVKLG 191
           +KRSKLVLPEPQ++D+EL+Q+VK+G
Sbjct: 285 KKRSKLVLPEPQISDRELEQIVKIG 309


>Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
 Frame = +2

Query: 314 DRILMEAQNVMALTHVDTPLKGGLNTPLHESDF-SGALPQNQVVATPNTVL----ATPFR 478
           D + +E +N+MAL + ++ LKGGLNTPLHES+   G LP  +V ATPNTVL    ATP  
Sbjct: 352 DTVQLELENLMALQNTESALKGGLNTPLHESELGKGVLPTPKVAATPNTVLHAIAATPGT 411

Query: 479 SSRSEVSTPGVLTLQDMAIVSLG*PQACEINLISTLKTE*MVVTLLKFPINFKNKPKTSV 658
            S+   STPG       ++ +        IN       E +  + L        + K S+
Sbjct: 412 QSQFPGSTPGGFATPAGSVAATPFRDQMRIN-------EEIAGSAL--------EQKASL 456

Query: 659 RNALQSLPVPRNDYEIVVPEQEAGEDKDDSAASRFRGG 772
           + AL SLP P+ND+E+V P+ +  E   +  +++   G
Sbjct: 457 KRALASLPTPKNDFEVVGPDDDEVEGAVEDESNQDEDG 494



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/25 (72%), Positives = 25/25 (100%)
 Frame = +3

Query: 117 RKRSKLVLPEPQVTDQELQQVVKLG 191
           +KRSKLVLPEPQ++D+EL+Q+VK+G
Sbjct: 285 KKRSKLVLPEPQISDRELEQIVKIG 309


>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 356 HVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSEVSTP 505
           H+   L    + P H +    A P+N + +TP   LATP  SS+S+ + P
Sbjct: 305 HMPPSLMASPDVPKHSATI--APPRNSMCSTPRLQLATPM-SSQSQQTFP 351


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 356 HVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSEVSTP 505
           H+   L    + P H +    A P+N + +TP   LATP  SS+S+ + P
Sbjct: 305 HMPPSLMASPDVPKHSATI--APPRNSMCSTPRLQLATPM-SSQSQQTFP 351


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 356 HVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSEVSTP 505
           H+   L    + P H +    A P+N + +TP   LATP  SS+S+ + P
Sbjct: 305 HMPPSLMASPDVPKHSATI--APPRNSMCSTPRLQLATPM-SSQSQQTFP 351


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 356 HVDTPLKGGLNTPLHESDFSGALPQNQVVATPNTVLATPFRSSRSEVSTP 505
           H+   L    + P H +    A P+N + +TP   LATP  SS+S+ + P
Sbjct: 305 HMPPSLMASPDVPKHSATI--APPRNSMCSTPRLQLATPM-SSQSQQTFP 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,093,755
Number of Sequences: 27780
Number of extensions: 353865
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)