Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00093
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    26   1.2  
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    26   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   6.3  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    23   8.3  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +1

Query: 256 AGKVKGQTPKVE 291
           AGKVK QTPKVE
Sbjct: 11  AGKVKSQTPKVE 22


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +1

Query: 256 AGKVKGQTPKVE 291
           AGKVK QTPKVE
Sbjct: 11  AGKVKSQTPKVE 22


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 112 KSTNAFLDLTNGLLAIDVQDVCRLPSDMQL 23
           + T+  +D     LA+ ++D+C  P D+QL
Sbjct: 337 EDTDCLIDYLVATLAL-IRDLCAAPPDLQL 365


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 213 QCHCLVVKCTDLWLC 257
           +CH L +KC  +W C
Sbjct: 24  ECHRLKLKCDRVWPC 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,687
Number of Sequences: 5004
Number of extensions: 15182
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)