Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00093
         (316 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   2.0  
At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            25   8.1  
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    25   8.1  
At4g05145.1 68417.m00771 hypothetical protein                          25   8.1  
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            25   8.1  

>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 29   HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGD 127
            H+R QS      N   S   +K+R  TL A+G+
Sbjct: 1385 HLRSQSKQTCATNAVASPSPLKKRTSTLTAIGE 1417


>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 256 AGKVKGQTPKV 288
           AGKV+GQTPKV
Sbjct: 11  AGKVRGQTPKV 21


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 256 AGKVKGQTPKV 288
           AGKV+GQTPKV
Sbjct: 11  AGKVRGQTPKV 21


>At4g05145.1 68417.m00771 hypothetical protein
          Length = 219

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 67  WPGVHWSDQGTHSYSCCSW 123
           W  V W    T  YS CSW
Sbjct: 52  WHKVIWFSHATPKYSFCSW 70


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 256 AGKVKGQTPKV 288
           AGKV+GQTPKV
Sbjct: 11  AGKVRGQTPKV 21


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,640,480
Number of Sequences: 28952
Number of extensions: 83289
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)