Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00092
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   158   9e-40
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.70 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.6  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   3.8  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    27   3.8  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   3.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  158 bits (383), Expect = 9e-40
 Identities = 80/159 (50%), Positives = 102/159 (64%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSMNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDK 393
           K +   E  L    IKE++I+D+FL P +NDEV+K++PVQKQTRAGQRTRFKAFV IGD 
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 394 QRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLLGYKIGKPHTVPCKVTGKCGSVTV 573
                 G +  +              +      +   G  +G PHTVP KV+GKCGSVTV
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTV 166

Query: 574 RLFPATRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 690
           RL PA RG G+V+APV K+ LQ+AG++DCYT +RGST T
Sbjct: 167 RLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKT 205



 Score =  111 bits (268), Expect = 8e-26
 Identities = 58/127 (45%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSLISSSARP*MMRF*RSCLYR 334
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SL  K  +  I     P +       +  
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQ--IVDYFLPRLNDEVMKVVPV 85

Query: 335 NKHVPDSAHVS-RHLLPLATNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGT 511
            K          +  + +  ++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWGT
Sbjct: 86  QKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGT 145

Query: 512 R-SESHT 529
              + HT
Sbjct: 146 ALGDPHT 152


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 626 RSFFRWLVYRTATPQLVVQL 685
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 152 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 482 LPVRRGYWGTRSESHTPSLARSPASVVL*QSGXFLQLVVLELCLRQFLRSFFRWLVYRTA 661
           L V  G W T+ + HTPS    P  V L   G + +   + +C+   +  F  +++ R A
Sbjct: 37  LIVLLGLWSTQDKWHTPS---EPDPVYLSDMGAYTKGFFIPMCVITGVFYFLTFIMIRLA 93


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = +2

Query: 344 VPDSAHVSRHL--LPLATNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTRS 517
           + D+  V +HL  L   T+ G   L +K  KE    I         +  P+R+G W  R 
Sbjct: 153 IKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNRE 212

Query: 518 ESHTPSLARSPASVVL 565
                SL    A  V+
Sbjct: 213 VEIINSLYLLTAKPVI 228


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 193 RPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLGPSMNDE 309
           R    +++NR+T +  LV  T+      +FF  P ++D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 572 SGXFLQLVVLELCLRQFLRSFFRWLVYRTATP 667
           S  ++Q ++LEL  RQ    F+R  ++  +TP
Sbjct: 470 SPKWIQAIILELKFRQIELIFYRPFIHSISTP 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,481
Number of Sequences: 5004
Number of extensions: 63798
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)