Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00092
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 152 3e-37
03_06_0386 + 33555682-33556344,33557138-33557299 151 6e-37
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 73 2e-13
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 28 6.9
04_04_1290 + 32399905-32399972,32400502-32400571,32400950-324017... 28 6.9
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 28 6.9
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 152 bits (368), Expect = 3e-37
Identities = 80/159 (50%), Positives = 101/159 (63%)
Frame = +1
Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSMNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDK 393
K + E L +KE +I++ + P + DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 394 QRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLLGYKIGKPHTVPCKVTGKCGSVTV 573
G + + + + G KIGKPHTVPCKVTGKCGSVTV
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 179
Query: 574 RLFPATRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 690
R+ PA RG+GIV+A VPKK+LQ AG++D +TS+RGST T
Sbjct: 180 RMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKT 218
Score = 111 bits (268), Expect = 4e-25
Identities = 59/128 (46%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Frame = +2
Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL--ISSSARP*MMRF*RSCL 328
++++++WVPVTKLGRLV+E KI K+E IYL SL K + + + + +M+ + +
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLVPGLKDEVMKI--TPV 98
Query: 329 YRNKHVPDSAHVSRHLLPLATNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 508
+ ++ + +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWG
Sbjct: 99 QKQTRAGQRTRFKAFVV-VGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWG 157
Query: 509 TR-SESHT 529
+ + HT
Sbjct: 158 NKIGKPHT 165
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 151 bits (366), Expect = 6e-37
Identities = 76/145 (52%), Positives = 97/145 (66%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSMNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDKQRSYWFGCEVQQGS 435
+KE +I++ + P + DEV+KI PVQKQTRAGQRTRFKAFV +GD G + +
Sbjct: 72 VKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEV 130
Query: 436 RHCHSRRYYPC*VVCFTSSKRLLGYKIGKPHTVPCKVTGKCGSVTVRLFPATRGTGIVSA 615
+ + G KIG+PHTVPCKVTGKCGSVTVR+ PA RG+GIV+A
Sbjct: 131 ATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 190
Query: 616 PVPKKLLQMAGVQDCYTSARGSTGT 690
VPKK+LQ AG++D +TS+RGST T
Sbjct: 191 RVPKKVLQFAGIEDVFTSSRGSTKT 215
Score = 116 bits (280), Expect = 2e-26
Identities = 60/128 (46%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Frame = +2
Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSR--SLISSSARP*MMRF*RSCL 328
++++++WVPVTKLGRLV+EG+ K+E IYL SL K + + + +M+ + +
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLVPGLKDEVMKI--TPV 95
Query: 329 YRNKHVPDSAHVSRHLLPLATNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 508
+ ++ + NNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWG
Sbjct: 96 QKQTRAGQRTRFKAFVV-VGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWG 154
Query: 509 TR-SESHT 529
+ + HT
Sbjct: 155 NKIGQPHT 162
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 73.3 bits (172), Expect = 2e-13
Identities = 34/66 (51%), Positives = 45/66 (68%)
Frame = +1
Query: 520 KPHTVPCKVTGKCGSVTVRLFPATRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTWEI 699
KPHTV CKV K GSVTVR+ G+ +V+ VPKK+L+ AG++D +TS+RGST T
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSN 106
Query: 700 LLKPHM 717
+K M
Sbjct: 107 FVKHQM 112
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 395 NGHIGLGVKCSKEVATAIRGAIILA 469
+ HI LGVKC+K AT + GAIILA
Sbjct: 9 DSHIELGVKCAK--ATTMSGAIILA 31
>06_01_0591 +
4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 321 HACTETNTCRTAHTFQGICCHWRQTTVI 404
H TETN A + +CC W ++++
Sbjct: 600 HCNTETNVNAMAVILRNVCCSWSSSSIV 627
>04_04_1290 +
32399905-32399972,32400502-32400571,32400950-32401734,
32403068-32403674
Length = 509
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 359 HVSRHLLPLATNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTRS 517
+ RHL L ++G++G G ++ + A++ +++LPV RG T S
Sbjct: 257 YAKRHLSGLTRHSGYVGGGGASGTVLSDVEQRALLEEIVALLPVERGVATTSS 309
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 368 RHLLPLATNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTRSESH-TP 532
R ++ + GH+G+GV +KEV AI A + + +++ V + T H TP
Sbjct: 193 RAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNLVTVPLTKYSTFPHRHCTP 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,051,708
Number of Sequences: 37544
Number of extensions: 462139
Number of successful extensions: 1295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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