Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00092
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   164   5e-41
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  164 bits (399), Expect = 5e-41
 Identities = 87/145 (60%), Positives = 97/145 (66%)
 Frame = +1

Query: 256 IKEFEIIDFFLGPSMNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDKQRSYWFGCEVQQGS 435
           IKEFEIID  L  ++ DEVLKI PVQKQT AGQRTRFKAFVAIGD       G +  +  
Sbjct: 85  IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEV 143

Query: 436 RHCHSRRYYPC*VVCFTSSKRLLGYKIGKPHTVPCKVTGKCGSVTVRLFPATRGTGIVSA 615
                       +      +   G KIG PHTVPCKVTGKC SV VRL PA RGTGIVSA
Sbjct: 144 ATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSA 203

Query: 616 PVPKKLLQMAGVQDCYTSARGSTGT 690
           PVPKKLL MAG++DCYT+A+GST T
Sbjct: 204 PVPKKLLHMAGIEDCYTAAKGSTAT 228



 Score =  105 bits (251), Expect = 4e-23
 Identities = 57/121 (47%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
 Frame = +2

Query: 158 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL--ISSSARP*MMRF*RSCLY 331
           E + EW PVTKLGRLV+E KI  LE IYL SL  K    +  + S+ +  +++   S + 
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKI--SPVQ 109

Query: 332 RNKHVPDSAHVSRHLLPLATNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGT 511
           +           +  + +  + GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWG 
Sbjct: 110 KQTTAGQRTRF-KAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGN 168

Query: 512 R 514
           +
Sbjct: 169 K 169


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +1

Query: 487 SSKRLLGYKIGKPHTVPCKVTGKCGSVTVRLFPATRGTGIVSAPVPKKLLQMAGVQDCYT 666
           +S++L   ++ +  T+      +C +  V      RG G+   P   K+ +  G++D Y 
Sbjct: 193 ASRKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYV 252

Query: 667 SARGST 684
              GST
Sbjct: 253 KVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +1

Query: 487 SSKRLLGYKIGKPHTVPCKVTGKCGSVTVRLFPATRGTGIVSAPVPKKLLQMAGVQDCYT 666
           +S++L   ++ +  T+      +C +  V      RG G+   P   K+ +  G++D Y 
Sbjct: 193 ASRKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYV 252

Query: 667 SARGST 684
              GST
Sbjct: 253 KVEGST 258


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 499 TSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVCR 386
           TS+NW N QL   NS + GSG       + T M+   R
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSGVQFDQSLSSTTMSPTAR 346


>Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical
           protein Y53C12B.1 protein.
          Length = 793

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 636 KKLLRNWRRHNSSTTSCRKXPDCYRTTLAGDLARD 532
           KKL+  W+ HNS  T+  + PD  R  +A  L+RD
Sbjct: 184 KKLVNTWKSHNSHITALLQVPDS-RVVVA--LSRD 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,440,185
Number of Sequences: 27780
Number of extensions: 380835
Number of successful extensions: 1244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)