Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00091
(438 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9NPE3 Cluster: H/ACA ribonucleoprotein complex subunit... 99 2e-20
UniRef50_Q9V5P6 Cluster: H/ACA ribonucleoprotein complex subunit... 94 1e-18
UniRef50_Q93XX8 Cluster: H/ACA ribonucleoprotein complex subunit... 82 6e-15
UniRef50_Q019V2 Cluster: H/ACA snoRNP complex, subunit NOP10; n=... 73 3e-12
UniRef50_A2EP66 Cluster: Nucleolar RNA-binding protein, putative... 52 7e-06
UniRef50_UPI0000498FA1 Cluster: conserved hypothetical protein; ... 49 5e-05
UniRef50_Q2FPD6 Cluster: Nucleolar RNA-binding protein Nop10p; n... 46 5e-04
UniRef50_A6UUW5 Cluster: Nucleolar RNA-binding protein Nop10p; n... 42 0.008
UniRef50_Q97Z78 Cluster: Ribosome biogenesis protein Nop10; n=2;... 41 0.013
UniRef50_Q8U1R4 Cluster: Ribosome biogenesis protein Nop10; n=7;... 36 0.29
UniRef50_A0B683 Cluster: Nucleolar RNA-binding protein Nop10p; n... 36 0.50
UniRef50_Q8TT00 Cluster: Ribosome biogenesis protein Nop10; n=7;... 36 0.50
UniRef50_Q8ZTY6 Cluster: Ribosome biogenesis protein Nop10; n=4;... 35 0.66
UniRef50_A0Q1X6 Cluster: Putative uncharacterized protein; n=1; ... 35 0.87
UniRef50_Q05E71 Cluster: Small nucleolar RNP protein Nop10p; n=3... 35 0.87
UniRef50_A4WE86 Cluster: Regulatory protein, IclR; n=6; Enteroba... 33 2.7
UniRef50_Q8TY85 Cluster: Ribosome biogenesis protein Nop10; n=2;... 33 2.7
UniRef50_A2AX81 Cluster: Gustatory receptor candidate 19; n=1; T... 32 4.7
UniRef50_Q1QVZ9 Cluster: Mammalian cell entry related precursor;... 31 8.1
UniRef50_Q384Y2 Cluster: Putative uncharacterized protein; n=1; ... 31 8.1
UniRef50_Q5UX23 Cluster: Ribosome biogenesis protein Nop10; n=5;... 31 8.1
>UniRef50_Q9NPE3 Cluster: H/ACA ribonucleoprotein complex subunit 3;
n=25; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 3 - Homo sapiens (Human)
Length = 64
Score = 99 bits (238), Expect = 2e-20
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 76 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 255
M+L+YYLN++GDR YTL DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+TQQP
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
>UniRef50_Q9V5P6 Cluster: H/ACA ribonucleoprotein complex subunit 3;
n=13; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 3 - Drosophila melanogaster (Fruit fly)
Length = 64
Score = 93.9 bits (223), Expect = 1e-18
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +1
Query: 76 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 255
MYL Y +N+ GDR YTL G+PTLSAHPARFSPEDKYSR R+ IKKRFGLLLTQ+P
Sbjct: 1 MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60
>UniRef50_Q93XX8 Cluster: H/ACA ribonucleoprotein complex subunit
3-like protein; n=35; Eukaryota|Rep: H/ACA
ribonucleoprotein complex subunit 3-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 81.8 bits (193), Expect = 6e-15
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +1
Query: 76 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 255
MYL+ Y+N+KG++ YT P G T SAHPARFSP+DKYS+ R+++KKRFGLL TQ
Sbjct: 1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60
Query: 256 NL 261
L
Sbjct: 61 PL 62
>UniRef50_Q019V2 Cluster: H/ACA snoRNP complex, subunit NOP10; n=2;
Eukaryota|Rep: H/ACA snoRNP complex, subunit NOP10 -
Ostreococcus tauri
Length = 91
Score = 72.9 bits (171), Expect = 3e-12
Identities = 38/72 (52%), Positives = 46/72 (63%), Gaps = 13/72 (18%)
Frame = +1
Query: 79 YLRYYLNDKGDREYTLATID-------------PFGKPTLSAHPARFSPEDKYSRHRIII 219
YL YY ++KG+R YTL P G PT SAHPARFSP+DK+S+ R+ +
Sbjct: 16 YLMYYTDEKGERVYTLKVRSAKRRKPRAGDKTAPDGTPTHSAHPARFSPDDKFSKQRVAL 75
Query: 220 KKRFGLLLTQQP 255
KKRFGLL TQQP
Sbjct: 76 KKRFGLLPTQQP 87
>UniRef50_A2EP66 Cluster: Nucleolar RNA-binding protein, putative;
n=2; Trichomonas vaginalis G3|Rep: Nucleolar RNA-binding
protein, putative - Trichomonas vaginalis G3
Length = 83
Score = 51.6 bits (118), Expect = 7e-06
Identities = 28/51 (54%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 112 REYTLATIDP-FGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQPNL 261
++YTL P G T SAHPARFSPEDK S RI K +F LL QQP++
Sbjct: 31 KQYTLKQKCPRCGGQTRSAHPARFSPEDKNSAERIQTKAKFNLLPYQQPDI 81
>UniRef50_UPI0000498FA1 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 59
Score = 48.8 bits (111), Expect = 5e-05
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 82 LRYYLNDKGDREYTLATIDPFGKPTL-SAHPARFSPEDKYSRHRIIIKKRFGLLLTQQPN 258
L YY ++ ++YT+ T P + SAHPA+FSP D YS++RI KK FGLL T N
Sbjct: 2 LLYYCDNC--KQYTMKTECPQCNGYVRSAHPAKFSPVDPYSKYRIATKKEFGLLPTSTKN 59
>UniRef50_Q2FPD6 Cluster: Nucleolar RNA-binding protein Nop10p; n=1;
Methanospirillum hungatei JF-1|Rep: Nucleolar
RNA-binding protein Nop10p - Methanospirillum hungatei
(strain JF-1 / DSM 864)
Length = 49
Score = 45.6 bits (103), Expect = 5e-04
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +1
Query: 109 DREYTLA-TIDPFGKPTLSAHPARFSPEDKYSRHRIIIK 222
D YTL+ T GKPT++ HPAR+SP+D+Y ++R +I+
Sbjct: 11 DNLYTLSETCSSCGKPTITPHPARYSPDDRYGKYRRMIR 49
>UniRef50_A6UUW5 Cluster: Nucleolar RNA-binding protein Nop10p; n=1;
Methanococcus aeolicus Nankai-3|Rep: Nucleolar
RNA-binding protein Nop10p - Methanococcus aeolicus
Nankai-3
Length = 51
Score = 41.5 bits (93), Expect = 0.008
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 112 REYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKK 225
+ YTL TI G+ T++ P R+SP DKY ++R ++KK
Sbjct: 10 KNYTLNTICQCGEKTITVKPPRYSPTDKYGKYRRMLKK 47
>UniRef50_Q97Z78 Cluster: Ribosome biogenesis protein Nop10; n=2;
Sulfolobus|Rep: Ribosome biogenesis protein Nop10 -
Sulfolobus solfataricus
Length = 56
Score = 40.7 bits (91), Expect = 0.013
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 109 DREYTLA-TIDPFGKPTLSAHPARFSPEDKYSRHRIIIKK 225
D YT T G T+ HP+RFSPEDKY ++RI +KK
Sbjct: 11 DNIYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKK 50
>UniRef50_Q8U1R4 Cluster: Ribosome biogenesis protein Nop10; n=7;
Archaea|Rep: Ribosome biogenesis protein Nop10 -
Pyrococcus furiosus
Length = 60
Score = 36.3 bits (80), Expect = 0.29
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 118 YTLATIDPF-GKPTLSAHPARFSPEDKYSRHR 210
YTL + P G+ T AHP RFSPED Y +R
Sbjct: 14 YTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYR 45
>UniRef50_A0B683 Cluster: Nucleolar RNA-binding protein Nop10p; n=1;
Methanosaeta thermophila PT|Rep: Nucleolar RNA-binding
protein Nop10p - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 60
Score = 35.5 bits (78), Expect = 0.50
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 112 REYTLATIDP-FGKPTLSAHPARFSPEDKYSRHR 210
R YTL P G T PARFSPED+Y R+R
Sbjct: 13 RLYTLKETCPRCGSHTTGTKPARFSPEDRYGRYR 46
>UniRef50_Q8TT00 Cluster: Ribosome biogenesis protein Nop10; n=7;
Euryarchaeota|Rep: Ribosome biogenesis protein Nop10 -
Methanosarcina acetivorans
Length = 51
Score = 35.5 bits (78), Expect = 0.50
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 118 YTLATIDPF-GKPTLSAHPARFSPEDKYSRHRIIIKK 225
YTL P G TL A PARFSP+D Y ++R + KK
Sbjct: 14 YTLREKCPVCGGVTLPAIPARFSPQDPYGKYRRLAKK 50
>UniRef50_Q8ZTY6 Cluster: Ribosome biogenesis protein Nop10; n=4;
Archaea|Rep: Ribosome biogenesis protein Nop10 -
Pyrobaculum aerophilum
Length = 72
Score = 35.1 bits (77), Expect = 0.66
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 166 HPARFSPEDKYSRHRIIIKKRFGLL 240
HP +FSPEDKY ++RI+ K G L
Sbjct: 32 HPPKFSPEDKYQKYRILQKLLMGKL 56
>UniRef50_A0Q1X6 Cluster: Putative uncharacterized protein; n=1;
Clostridium novyi NT|Rep: Putative uncharacterized
protein - Clostridium novyi (strain NT)
Length = 161
Score = 34.7 bits (76), Expect = 0.87
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -2
Query: 398 FVRAFVFCCMLYKSCVP*ILKIIVKMYQNLDHFGNFQ 288
++ AF+ + KSC P I ++IV++ NLD + NF+
Sbjct: 86 YMEAFMNYSLNIKSCYPNIYRVIVRLLMNLDKYENFE 122
>UniRef50_Q05E71 Cluster: Small nucleolar RNP protein Nop10p; n=3;
Desulfurococcaceae|Rep: Small nucleolar RNP protein
Nop10p - Aeropyrum pernix
Length = 58
Score = 34.7 bits (76), Expect = 0.87
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 145 GKPTLSAHPARFSPEDKYSRHRIIIKKRFGLL 240
G P HP RFSP++++ ++R ++K+ GL+
Sbjct: 25 GGPVAVPHPPRFSPDNRFIKYRYELQKKLGLI 56
>UniRef50_A4WE86 Cluster: Regulatory protein, IclR; n=6;
Enterobacteriaceae|Rep: Regulatory protein, IclR -
Enterobacter sp. 638
Length = 253
Score = 33.1 bits (72), Expect = 2.7
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 284 KSIFILMNRFGCCVSSRPNLFLII-ILCLEYLSSGEKRAGCAD 159
+S L+ R +SS+PN LI I CL+YL S ++ GC +
Sbjct: 11 ESSHTLLKRMSVAMSSQPNQSLIDGIRCLQYLVSSDRAIGCRE 53
>UniRef50_Q8TY85 Cluster: Ribosome biogenesis protein Nop10; n=2;
Euryarchaeota|Rep: Ribosome biogenesis protein Nop10 -
Methanopyrus kandleri
Length = 66
Score = 33.1 bits (72), Expect = 2.7
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 166 HPARFSPEDKYSRHRIIIKKR 228
HP RFSPED Y ++R +KKR
Sbjct: 32 HPHRFSPEDPYGKYRRKLKKR 52
>UniRef50_A2AX81 Cluster: Gustatory receptor candidate 19; n=1;
Tribolium castaneum|Rep: Gustatory receptor candidate 19
- Tribolium castaneum (Red flour beetle)
Length = 355
Score = 32.3 bits (70), Expect = 4.7
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = -2
Query: 407 YISFVRAFVFCCMLYKSCVP*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFGCCVSSRPN 228
Y V F C+ Y C I + + + HF C I M+ CC N
Sbjct: 134 YYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIYHFF---CAFIIFTMHLLFCCAFIFFN 190
Query: 227 LFLIIILCLEYLS 189
+ L+ +LCL+Y +
Sbjct: 191 MHLLFLLCLDYFT 203
>UniRef50_Q1QVZ9 Cluster: Mammalian cell entry related precursor;
n=2; Gammaproteobacteria|Rep: Mammalian cell entry
related precursor - Chromohalobacter salexigens (strain
DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 547
Score = 31.5 bits (68), Expect = 8.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 178 FSPEDKYSRHRIIIKKRFGLLLTQQPNLFIKINIDL 285
F PE+K RHR+ I+ + +L+T +I +D+
Sbjct: 191 FDPEEKEMRHRLYIQSPYDVLVTDTTRFWISSGVDV 226
>UniRef50_Q384Y2 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 177
Score = 31.5 bits (68), Expect = 8.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 435 FFFFFHNKVIYFFCKSICVLLYVI*ILCALDFE 337
+ FFF + + FC C+LL+ + +LC L FE
Sbjct: 36 WLFFFPFTISFVFCCFCCLLLFFLSLLCFLFFE 68
>UniRef50_Q5UX23 Cluster: Ribosome biogenesis protein Nop10; n=5;
Halobacteriaceae|Rep: Ribosome biogenesis protein Nop10
- Haloarcula marismortui (Halobacterium marismortui)
Length = 60
Score = 31.5 bits (68), Expect = 8.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 118 YTLATIDP-FGKPTLSAHPARFSPEDKYSRHRIIIKKR 228
YTL P G +++ PA FSPED Y +R +K+R
Sbjct: 20 YTLDDTCPECGAEAVNSAPAPFSPEDSYGEYRRSLKRR 57
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,714,763
Number of Sequences: 1657284
Number of extensions: 7441277
Number of successful extensions: 16074
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16021
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -