Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00091
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967...    28   3.8  
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     27   6.6  
03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685...    27   6.6  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    27   8.7  

>03_03_0028 +
           13893813-13893959,13894961-13895264,13896557-13896761,
           13897428-13897646,13897734-13897869,13899130-13899387,
           13899402-13899686
          Length = 517

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 187 EDKYSRHRIIIKKRFGLLLTQQPNLFIKINID 282
           E+KYSR RI++ K FGL+        ++  +D
Sbjct: 250 EEKYSRARIMLAKVFGLITLMDDTYDVQDTLD 281


>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 438 FFFFFFHNKVIYFFCKSICVLLY 370
           FFFFFF     +FF ++ CV  Y
Sbjct: 73  FFFFFFFFFFFFFFDRASCVSSY 95


>03_06_0071 +
           31465707-31466237,31467455-31468075,31468438-31468520,
           31468895-31468979
          Length = 439

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 198 LKTQNNNQEEIWPAAYTTTEPI 263
           L   NN+   IWP +Y T  PI
Sbjct: 220 LLASNNDPSRIWPLSYATCAPI 241


>01_01_0588 +
           4372877-4372949,4374328-4376262,4376940-4377015,
           4378900-4378970,4379038-4379144,4379241-4379711,
           4379791-4379976,4380132-4380425,4380820-4381434,
           4382219-4382615,4382768-4382850,4383397-4383567,
           4384046-4384243,4384754-4385314,4385401-4385460,
           4385553-4385869,4385980-4386403,4386539-4387006,
           4387093-4387209,4387306-4387427,4387506-4388247,
           4388453-4388485,4388625-4388879,4388975-4389160,
           4390115-4390453,4391293-4392045
          Length = 3017

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 204 TQNNNQEEIWPAAYTTTEPI 263
           + N NQ + WP+ ++TT P+
Sbjct: 467 SSNENQVDSWPSGFSTTTPM 486



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 214  LFCVLSICLQEKNELDVLTMLVFQMGRWSLMCTL 113
            LF VL++C ++KN  + L     QM +WSL+  +
Sbjct: 1817 LFSVLAVCEKQKNPGEALLNKAKQM-QWSLLAMI 1849


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,576,603
Number of Sequences: 37544
Number of extensions: 179734
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)