Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00091
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-4|CAB02768.2|   64|Caenorhabditis elegans Hypothetical pr...    82   1e-16
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear horm...    27   7.9  
AC006675-9|AAK84553.1|  431|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z81038-4|CAB02768.2|   64|Caenorhabditis elegans Hypothetical
           protein C25A1.6 protein.
          Length = 64

 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 38/59 (64%), Positives = 47/59 (79%)
 Frame = +1

Query: 76  MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQ 252
           M+LRY+L++   R YTL    P G+ TL+AHPARFSPEDK S++RIIIKKRFGLL TQ+
Sbjct: 1   MFLRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQK 59


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 404 ISFVRAFVFCCMLYKSCVP*ILKIIVKMYQNLDHFGNFQCKS 279
           I+F+   +     YK C    L II  +  +L HF +  C++
Sbjct: 219 INFILFIIIIANKYKKCYKNFLLIIYSLLNSLTHFSSTNCEN 260


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 350 P*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFGCCVSSRPNLFLI 216
           P  L I V+  Q    FG  Q K +F L +   CC+  R +   I
Sbjct: 272 PRALAIRVENRQQQAKFGEIQAKKVFSLFSETTCCLVGRSSQLTI 316


>Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical
           protein T05E11.2 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 308 DHFGNFQCKSIFILMNRFGCCV 243
           D FG+F+  SI ++    GCC+
Sbjct: 67  DCFGDFELASIILISASLGCCI 88


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
            protein C26G2.2 protein.
          Length = 952

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 88   YYLNDKGDREYTLATIDPFGKPTLSAHPARFSP 186
            +YL  KG  E     +D     TLS  P+ FSP
Sbjct: 916  FYLKKKGVLEQLFRKLDRMKCNTLSTQPSAFSP 948


>AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical
           protein T15B7.11 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 344 ILKIIVKMYQNLDHFGNFQCKSIFILMNRFGCCVSSRPNLFL 219
           IL +IV  ++ + H G      +FI ++ FGC V+    LF+
Sbjct: 58  ILIVIVLSHKEMRHSG-INVIMMFIAVSDFGCAVTGLMQLFI 98


>AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 99 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 305 HFGNFQCKSIFILMNRFGCCVSSRP 231
           HFG   C++  +   RFG C + +P
Sbjct: 37  HFGAVTCRACAMFFRRFGRCKNMKP 61


>AC006675-9|AAK84553.1|  431|Caenorhabditis elegans Hypothetical
           protein M02H5.3 protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 305 HFGNFQCKSIFILMNRFGCCVSSRP 231
           HFG F C++  +   RFG   + +P
Sbjct: 46  HFGAFTCRACAVFFRRFGASNNLKP 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,275,820
Number of Sequences: 27780
Number of extensions: 194098
Number of successful extensions: 401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)