Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00090X
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   2.6  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   3.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   4.5  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = -1

Query: 312 HGHNGRLAIQARXSRDGRQRAPQR*HARTRKGETPQREQEG*REGDPSGDAKNESQRR*N 133
           HG +GRL  ++    + R R+P       R+  +P+      R   P G +++    R +
Sbjct: 107 HGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRS---RSRSPDGRSRSPDYDRRS 163

Query: 132 DSR 124
             R
Sbjct: 164 PKR 166


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 186 VTPLAPVAASPPC 224
           +TPL P+AAS PC
Sbjct: 507 LTPLDPIAASEPC 519


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 177 LPRVTPLAPVAASPP 221
           LPR+ PLAP+ A  P
Sbjct: 90  LPRLNPLAPIGARQP 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,773
Number of Sequences: 5004
Number of extensions: 12007
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)