Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00090X
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 28 1.8
01_01_1183 - 9428931-9429319,9429438-9429723 28 1.8
01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759... 27 3.1
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 27 4.1
09_04_0310 + 16578679-16580936,16581027-16581294 27 5.5
07_03_1189 + 24681067-24681588 27 5.5
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 27 5.5
02_03_0018 - 13978247-13978717 27 5.5
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 27 5.5
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 27 5.5
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 27 5.5
11_06_0611 + 25461469-25461655,25461670-25462238 26 7.2
06_01_0251 - 1890143-1891180 26 7.2
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 26 7.2
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 26 7.2
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 26 7.2
11_06_0500 + 24362627-24362828,24363046-24363704,24364958-243653... 26 9.6
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322... 26 9.6
04_04_0007 + 22119477-22120004 26 9.6
01_06_0112 + 26558618-26558778,26565370-26565580,26565665-265658... 26 9.6
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 225 RKGETPQREQEG*R-EGDPSGDAKNESQRR*NDSR*GEXGTAP 100
R GE +R ++ R EGD DA+ + +RR DS+ GE P
Sbjct: 42 RAGEEQERAEDDKRDEGDGERDAREDKERREGDSQ-GEETDEP 83
>01_01_1183 - 9428931-9429319,9429438-9429723
Length = 224
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = -3
Query: 322 PRESRTQWATRHPGAXQSGRPTARATTLARPHAQGGDAATGARGVTRG 179
P S AT HPGA SG + G A A GV G
Sbjct: 171 PAPSAAAAATSHPGASASGPGASSGAAAVAAGGAGAAVAAAAMGVLAG 218
>01_01_0965 -
7589659-7589785,7590188-7590317,7590339-7590438,
7590524-7590643,7590910-7591145,7591585-7591714
Length = 280
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 195 LAPVAASPPCACGRASVVARAVGR 266
LAP +PP C RA VV AVG+
Sbjct: 29 LAPPPRAPPRLCKRAGVVLIAVGK 52
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/65 (21%), Positives = 26/65 (40%)
Frame = -1
Query: 345 TKIPGDFNLESHGHNGRLAIQARXSRDGRQRAPQR*HARTRKGETPQREQEG*REGDPSG 166
++ P L SHG R ++R R R+P H R+ + + + PS
Sbjct: 726 SRSPAGGKLRSHGDRSRSMSRSRSLSGSRSRSPPPIHNRSPLASLSPKRESNAKSRSPSA 785
Query: 165 DAKNE 151
++ +
Sbjct: 786 SSEGK 790
>09_04_0310 + 16578679-16580936,16581027-16581294
Length = 841
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 192 PLAPVAASPPCA-CGRASVVARAVGRPDCXAPG 287
P P AA P A G A+ A A G+P APG
Sbjct: 115 PNLPTAAPPRAAGSGAAAAAAAAGGKPASRAPG 147
>07_03_1189 + 24681067-24681588
Length = 173
Score = 26.6 bits (56), Expect = 5.5
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = -3
Query: 343 KDPRRLQ----PRESRTQWATRHPGAXQSGRPTARATTLARPHAQG-GDAA 206
K PR+L+ RE + T PG +PTAR L R +G G+ A
Sbjct: 39 KLPRKLEGTRVSREGEREGGTTEPGRRGDEQPTARKRVLRRRAGEGVGEGA 89
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 232 PHA-QGGDAATGARGVTRGRSQ 170
PH QGG ATG RG +R R++
Sbjct: 90 PHGEQGGGGATGERGHSRSRAE 111
>02_03_0018 - 13978247-13978717
Length = 156
Score = 26.6 bits (56), Expect = 5.5
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = -1
Query: 285 QARXSRDGRQRAPQR*HARTRKGETPQREQEG*REGDPSGDAKNESQRR*NDSR*GEXGT 106
QA DG +R Q R GETP G R D G ++S R ND R GE +
Sbjct: 88 QAMAGHDGDERRRQAMQRGVRGGETPGTGMWGGRL-DSGGGGYDDSARS-NDGR-GEGDS 144
Query: 105 A 103
A
Sbjct: 145 A 145
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 261 RQRAPQR*HARTRKGETPQREQEG*REGDPSGDAKNESQR 142
R R+P H+R+R +R + R P G ++ +QR
Sbjct: 215 RDRSPYMQHSRSRSRGRDERSRSRSRSRSPRGKSRGRNQR 254
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -1
Query: 348 ITKIPGDFNLESHGH 304
+TK+PG+FNLES H
Sbjct: 884 LTKLPGNFNLESLEH 898
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 213 SPPCACGRASVVARAVGRPDCXAPGW 290
SP C CGR A A GRP A W
Sbjct: 188 SPSCLCGRRRAAA-AAGRPVLSARYW 212
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 177 LPRVTPLAPVAASPPCACGRASVVARAVGRPDCXAP 284
LP PLAP SPP RA A R +P
Sbjct: 91 LPPPWPLAPACLSPPPPLPRAETGRSAASRATAASP 126
>06_01_0251 - 1890143-1891180
Length = 345
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -3
Query: 337 PRRLQPRESRTQWATRHPGAXQSGRPTARATTLARPHAQG 218
P + + W T H G + PT AT L PHA G
Sbjct: 43 PCEFEELRDKRSWVTSH-GWVLTWDPTTLATFLWNPHAAG 81
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 177 LPRVTPLAPVAASPPCACGRASVVARAVGRPDCXAPG 287
LP P+AP+ A PP A A A AV G
Sbjct: 18 LPVPPPIAPIPAPPPRAPAPAPAAAAAVASTSAAGGG 54
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 177 LPRVTPLAPVAASPPCACGRASVVARAVGRPDCXAPG 287
LP P+AP+ A PP A A A AV G
Sbjct: 18 LPVPPPIAPIPAPPPRAPAPAPAAAAAVASTSAAGGG 54
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 270 RDGRQRAPQR*HARTRKGETPQREQEG*REGDPSGDA 160
R G H++ GE PQRE G+ +GDA
Sbjct: 582 RKGSGEGSSSLHSQEETGEMPQRELSMEHAGEKAGDA 618
>11_06_0500 +
24362627-24362828,24363046-24363704,24364958-24365300,
24366227-24366645
Length = 540
Score = 25.8 bits (54), Expect = 9.6
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = -3
Query: 307 TQWATRHPGAXQSGRPTARATTLARPHAQGGD---AATGAR 194
++W R P Q GRP R A P D ATGAR
Sbjct: 22 SRWRGRRPIGAQWGRPIPRGGFPATPTPSSSDELSLATGAR 62
>11_01_0419 +
3226224-3226756,3228010-3228169,3228256-3228435,
3228525-3228659,3229262-3229344,3229442-3229535,
3229649-3229735
Length = 423
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 279 RXSRDGRQRAPQR*HARTRKGETP 208
R SR GR+R PQR R R+G P
Sbjct: 102 RRSRQGRRRRPQR---RRRRGSRP 122
>04_04_0007 + 22119477-22120004
Length = 175
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 283 GAXQSGRPTARATTLARPHAQGGDAATGARG 191
GA GRP + ++ GG +A G RG
Sbjct: 130 GAGMRGRPAHHHRLMQGGYSSGGSSAAGGRG 160
>01_06_0112 +
26558618-26558778,26565370-26565580,26565665-26565826,
26566650-26566874,26566960-26567073
Length = 290
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 174 DLPRVTPLAPVAASPPCACGRASVV 248
DLP+ + APV PP A +A V+
Sbjct: 194 DLPQASSQAPVVVDPPQAPAQAPVI 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,211,659
Number of Sequences: 37544
Number of extensions: 130874
Number of successful extensions: 641
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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