Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00090X
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   1.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   3.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   7.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   7.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 195 LAPVAASPPCACGRASVVARAVGRPDCXAPG 287
           L P ++  P      S ++ A+GR  C +PG
Sbjct: 273 LNPNSSLQPSLASHHSHLSSALGRSACHSPG 303


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 180 PRVTPLAPVAASPPCACGRASVVARAVGRPDC 275
           P++TP    A +   ACG A   A  +    C
Sbjct: 107 PKLTPYPNWAQNKAGACGSAITTAYRIHADSC 138


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 234 ARTRKGETPQREQE 193
           AR +KG TP++++E
Sbjct: 172 ARKKKGPTPRQQEE 185



 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 146 WLSFFASPLGSPS 184
           WL+   SP+GSPS
Sbjct: 88  WLANANSPVGSPS 100


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 146 WLSFFASPLGSPSR 187
           W+SF+  P  +P+R
Sbjct: 263 WVSFWIKPEAAPAR 276


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 98  GGAVPXSPYRESFYLLWLSFF 160
           G A+P  PY E+    W   F
Sbjct: 224 GDAIPTVPYTETETETWTRVF 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,171
Number of Sequences: 438
Number of extensions: 1025
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)