Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00089
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 31 0.17
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 30 0.39
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 2.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 2.1
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa... 27 3.6
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom... 27 3.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 4.8
SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|ch... 26 6.4
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.4
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 25 8.4
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 8.4
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 8.4
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 31.1 bits (67), Expect = 0.17
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 192 ADVSDEKSLRSMCEQARVVVNVAGRTDYTE 281
A+VSDEK +RS+C++ R + ++ R + E
Sbjct: 518 AEVSDEKKIRSLCKKLRAIDDLKSRLNNNE 547
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 29.9 bits (64), Expect = 0.39
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 48 VLEMIRLSKKYPALTWGIAGRSEKKLEELKQEATQKSGEDQTNLKTFIADVSDEKSLRSM 227
+L + KKY + + +GRS+KK LK+ + D NL T + D + +R
Sbjct: 193 ILTVYIYKKKYCVIKFNKSGRSKKKDSWLKRSKDELLRTDSANLLT-LNDNDEPVMIRHS 251
Query: 228 CEQARVV 248
C++ ++
Sbjct: 252 CKRTCIL 258
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 272 LYGEQVVKAAIESKTHYVDVSGEPEFMELMQLNYNEQAKD 391
L+GE +VKAA+ T Y+ ++ ++L L YN+ AK+
Sbjct: 866 LFGENIVKAALYEGTVYI-IATNSGLLKL--LRYNKDAKN 902
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 112 ERPAMPQVKAGYFLDSLIISSTARLPVKPVAPNI 11
E P +P+ KA +FL SL S A +P +P+A I
Sbjct: 733 EVPKVPE-KAPFFLPSLKDQSEATVPKQPIATEI 765
>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 191
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 108 RSEKKLEELKQEATQKSGEDQTNLKTFIADVSDEKSLRS 224
RSE++L+ KQ S E Q NLK DV +EK + S
Sbjct: 99 RSEEQLKNSKQSLIGHSTEIQNNLK-HKQDVENEKLIAS 136
>SPBC19C2.02 |pmt1||DNA methyltransferase
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 341 PEFMELMQLNYNEQAKDAGVYVISACGFDSIPCDL 445
P+ E+ LN+ + AK + ++A FD+ C L
Sbjct: 40 PQANEIYNLNHGKLAKHMDISTLTAKDFDAFDCKL 74
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 5 SDNIRRDRFHRQPSGAGDDQAVQEVSRFNLGHRWALREETRRIKTRGYSEKW 160
+D RRD+F + P+ D+ ++ + R G+R + GY +KW
Sbjct: 213 ADPYRRDKFGKLPTDYTKDENMRSLLRSYSGNRDSSSAPAVPQHMSGYLKKW 264
>SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 149
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 445 QVTRDAVKSAGADDVHAGVFGLFVVIQL 362
QV + +S G+D + GVFG + +QL
Sbjct: 108 QVVKTLGESLGSDKIKKGVFGAMMNVQL 135
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 595 ANSHKLKPLRKQLYPSQLPSYKPKLCRRWYH 687
++S L P+ LYP+ LP+ P + +H
Sbjct: 83 SSSPSLSPMTPNLYPNVLPNVHPGVSNYTHH 113
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.4
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = -2
Query: 271 SVRPATFTTTLACSHMLLNDFSSDTSAINVLRLVWSSPLF*VASCFNSSSFFSERPAMPQ 92
S+ P TF TLACS F + +L + S+ +F + F S F +
Sbjct: 129 SLVPLTFGVTLACS------FELSADIVGLLYALISTCIFVSQNIFGSKIFMEAKSHSTH 182
Query: 91 VKAGYFLDSLIISST 47
K Y +L++ S+
Sbjct: 183 TKKHYNKLNLLLYSS 197
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 50 AGDDQAVQEVSRFNLGHR 103
A +D+ +E SRF+LGHR
Sbjct: 457 AVEDEVKEEKSRFHLGHR 474
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 314 SLIRWLPSRPVLRIVGTARNVHHNSGLFAHAPQRLLIRYISYKRF 180
++I +P P L+++G +R++ + LF H +L +S +RF
Sbjct: 526 TVILMIPLDPRLKVLGISRDLLAYAILFIHIMVCILFLLLSTQRF 570
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,502
Number of Sequences: 5004
Number of extensions: 58049
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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