Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00089
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1142 + 24287674-24288357,24291451-24292137 74 1e-13
12_01_0240 + 1801797-1802014,1802314-1802411,1802556-1802638,180... 39 0.005
11_01_0243 + 1872229-1872446,1872745-1872842,1872991-1873073,187... 39 0.005
07_01_1044 - 9104013-9104138,9104293-9104467,9105134-9105183,910... 31 1.2
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 30 1.6
10_01_0002 - 34139-34234,34337-34345,34806-35048,35931-36003,361... 30 2.2
06_01_1106 + 9111560-9112942 30 2.2
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 30 2.2
01_01_0610 + 4533141-4533310,4534889-4535075,4535232-4535323,453... 30 2.2
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 29 3.8
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 29 3.8
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 29 5.0
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340... 29 5.0
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 29 5.0
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 28 8.8
02_05_0815 - 31977721-31977813,31978078-31978482,31978843-31979349 28 8.8
01_06_1449 - 37444769-37446190 28 8.8
01_05_0277 + 20310426-20312216 28 8.8
10_02_0102 + 5314875-5315231 24 8.9
>07_03_1142 + 24287674-24288357,24291451-24292137
Length = 456
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +2
Query: 260 GPYRLYGEQVVKAAIESKTHYVDVSGEPEFMELMQLNYNEQAKDAGVYVISACGFDSIPC 439
GP+RL+G QV A + +D+SGEPEFME ++ ++E A G +ISACGFDSIP
Sbjct: 103 GPFRLHGRQVAAACAAAGADCLDISGEPEFMERVEAEFHEAAAKNGSLIISACGFDSIPA 162
Query: 440 DLGVI 454
+LG +
Sbjct: 163 ELGFL 167
Score = 51.6 bits (118), Expect = 6e-07
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +3
Query: 3 DLIIFGATGFTGSRAVLEMIRL--SKKYPALTWGIAGRSEKKLEELKQEATQKSGEDQTN 176
D++IFGA+GFTG + E ++ P + +AGRS ++ + A G +
Sbjct: 16 DVVIFGASGFTGRYVIREALKFLPPSSSPLRSLALAGRSRDRVAAALRWAAGPGGA-APD 74
Query: 177 LKTFIADVSDEKSLRSMCEQARVVVNVAG 263
L +AD SD SL ++ +ARVV++ AG
Sbjct: 75 LPILVADASDPASLAALAARARVVLSCAG 103
>12_01_0240 +
1801797-1802014,1802314-1802411,1802556-1802638,
1802730-1802856,1803168-1803231,1803347-1803444,
1803526-1803610,1803723-1803846,1804153-1804254,
1804869-1804933,1805435-1805516,1805981-1806064
Length = 409
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 212 VVEEHVRTSQSCGERCGPYRLYGE-QVVKAAIESKTHYVDVSGEPEFMELMQLNYNEQAK 388
++EE ++ GP++ E V++AAI +KT Y+DV + ++ ++EQAK
Sbjct: 99 MLEEVLQDVDLVVHAAGPFQRENECTVLQAAIATKTAYIDVCDDTDY-SWRAKGFHEQAK 157
Query: 389 DAGVYVISACG 421
D G+ I+ G
Sbjct: 158 DCGIPAITTAG 168
Score = 31.9 bits (69), Expect = 0.54
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = +3
Query: 6 LIIFGATGFTGSRAVLEMIRLSKKYPALTWGIAGRSEKKLEELKQEATQKSGEDQTNLKT 185
+++ G TG G LSK P L IAGR+ +K E L K GE+ ++
Sbjct: 40 VLVLGGTGRVGGSTATA---LSKLRPDLNILIAGRNREKGESL----ASKLGEESEFVQ- 91
Query: 186 FIADVSDEKSLRSMCEQARVVVNVAG 263
D+ D L + + +VV+ AG
Sbjct: 92 --VDIRDRNMLEEVLQDVDLVVHAAG 115
>11_01_0243 +
1872229-1872446,1872745-1872842,1872991-1873073,
1873163-1873289,1873623-1873686,1873802-1873899,
1873981-1874065,1874179-1874302,1874608-1874709,
1874821-1874934,1875325-1875389,1875891-1875972,
1876069-1876152
Length = 447
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 212 VVEEHVRTSQSCGERCGPYRLYGE-QVVKAAIESKTHYVDVSGEPEFMELMQLNYNEQAK 388
++EE ++ GP++ E V++AAI +KT Y+DV + ++ ++EQAK
Sbjct: 99 MLEEVLQDVDLVVHAAGPFQRENECTVLQAAIATKTAYIDVCDDTDY-SWRAKGFHEQAK 157
Query: 389 DAGVYVISACG 421
D G+ I+ G
Sbjct: 158 DCGIPAITTAG 168
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/86 (29%), Positives = 39/86 (45%)
Frame = +3
Query: 6 LIIFGATGFTGSRAVLEMIRLSKKYPALTWGIAGRSEKKLEELKQEATQKSGEDQTNLKT 185
+++ G TG G LSK P L IAGR+ +K E L K G++ ++
Sbjct: 40 VLVLGGTGRVGGSTATA---LSKLRPDLNILIAGRNLEKGESL----ASKLGDESEFVQ- 91
Query: 186 FIADVSDEKSLRSMCEQARVVVNVAG 263
D+ D L + + +VV+ AG
Sbjct: 92 --VDIRDRNMLEEVLQDVDLVVHAAG 115
>07_01_1044 -
9104013-9104138,9104293-9104467,9105134-9105183,
9105271-9105297,9107490-9107535,9107679-9107734,
9108070-9108365,9108471-9109947
Length = 750
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 320 SESLIRWLPSRPVLRIVGTARNVHHNSGLFAH--APQRLLIRYI 195
S S RW +P+ ++V T HH+ G++ + +P + LIR I
Sbjct: 646 SNSCQRWEQGQPLDKLVVTTHKSHHHPGVYRNQRSPHKALIRSI 689
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 14 IRRDRFHRQPSGAGDDQAVQEVSRFNLGHRWA-----LREETRRIKTRGYSEKWR 163
I RD H++ + G +A ++ ++ LG + A + RR++ RG + KWR
Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWR 57
>10_01_0002 -
34139-34234,34337-34345,34806-35048,35931-36003,
36184-36265,36398-36580,36663-36702,36814-36886,
37022-37290
Length = 355
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 3 DLI-IFGATGFTGSRAVLEMIRLSKKYPALTWGIAGRSEKKLEELKQEATQ-KSGEDQTN 176
DL+ I GATG GSRAV E I+L + A G+ RS ++ L Q Q K +D T+
Sbjct: 73 DLVFIAGATGKVGSRAVREFIKLGFRVRA---GV--RSAQRASSLVQSVEQLKVDDDATS 127
>06_01_1106 + 9111560-9112942
Length = 460
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +3
Query: 9 IIFGATGFTGSRAVLEMIRLSKKYPALTWGIAGRSEKKLEELKQEATQ 152
+IFG G S V E+ LSKK I G S KKLEE+ E ++
Sbjct: 410 LIFGEEGKWASTRVSELAVLSKK----AMEIGGSSYKKLEEMVHEISE 453
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 14 IRRDRFHRQPSGAGDDQAVQEVSRFNLGHRWA-----LREETRRIKTRGYSEKWR 163
I RD H++ + G +A ++ ++ LG + A + RR++ RG + KWR
Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWR 57
>01_01_0610 +
4533141-4533310,4534889-4535075,4535232-4535323,
4536203-4536308,4536441-4536649,4537049-4537091,
4537413-4537645,4537762-4538233
Length = 503
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -1
Query: 587 CTRDSQVP*WST--PPRAASAACSGAT 513
C++DS+V W T PP + S++C G+T
Sbjct: 264 CSKDSKVKLWDTMAPPSSGSSSCVGST 290
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 135 KQEATQKSGEDQTNL--KTFIADVSDEKSLRSMCEQARVVVNVAGRTDYTENRS*RQPSN 308
K+ Q+ G D N+ + DV +E S E+A+V+VN A R+P N
Sbjct: 565 KENTVQQQGVDDGNVMDEQQNGDVDNETSNGKSSEEAKVIVNEAENDQAGPRDRRRKPQN 624
Query: 309 Q 311
Q
Sbjct: 625 Q 625
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 541 ARGGVLHYGTWESLVHSLANSHKLKPLRKQLYPSQL 648
+RG V H+GT +SL HSL+ P+ QL P +L
Sbjct: 294 SRGAVAHFGTLKSLEHSLSRLGHEIPM--QLNPLEL 327
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 245 CGERCGPYRLYGEQVVKAAIESKTHYVDVSGEPEFMEL 358
CGE R + EQ+ KAAI + T + S E + +E+
Sbjct: 68 CGEMARKLRFFREQMSKAAIATSTQFSGTSLEIDDLEV 105
>09_02_0042 -
3402424-3402534,3403242-3403345,3403448-3403562,
3404344-3404391,3404519-3404608,3404819-3404893,
3405001-3405153,3405695-3405779,3408051-3408121,
3408243-3408293,3409037-3409453,3409529-3409660,
3409779-3409892,3411113-3411179,3411264-3411397,
3411486-3411701,3412627-3413418
Length = 924
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 223 ACANKPELW*TLRAVPTIRRTGREGSHRIKDSL 321
AC N+P W T +P ++ + G H IK SL
Sbjct: 772 ACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSL 804
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 193 AINVLRLVWSSPLF*VASCFNSSSFFSERPAMPQVKAGYFLDSLII 56
A +L L W + + C + F S P+V A YFLD L++
Sbjct: 554 AKQMLSLDWIPLVLHILECGDEVQFLSSVKCAPKVAALYFLDQLLM 599
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 635 IPRSCPPTSPNSADDGTTGGNARRACRSW 721
IPR P +P S D+ TT +AC S+
Sbjct: 238 IPRVTLPYNPQSVDNATTQSKCAQACLSY 266
>02_05_0815 - 31977721-31977813,31978078-31978482,31978843-31979349
Length = 334
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 638 PRSCPPTSPNSADDGTTGGNARRACR 715
P S PP +P A G GG+A+ A R
Sbjct: 93 PVSSPPAAPTPAASGGGGGHAKAAAR 118
>01_06_1449 - 37444769-37446190
Length = 473
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 457 FNEKL*GRAEFCRVVYHVRVAPEHAAEAARGGVLHYGTWESLVHSLANSHKL 612
F E++ GR CR + +V + A A+ GG L + W S+ LAN +L
Sbjct: 333 FKERVNGRGVVCRG-WVPQV--KFLAHASVGGFLTHAGWNSIAEGLANGVRL 381
>01_05_0277 + 20310426-20312216
Length = 596
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 693 PPVVPSSAEFGLVGGQLRGIQLFSQRLQFVTVRQTVHQG 577
PP PS + G L +LFSQ L ++ +H G
Sbjct: 85 PPAQPSPTHLAFLAGSLASSRLFSQALDALSHLLRLHPG 123
>10_02_0102 + 5314875-5315231
Length = 118
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 626 NSCIPRSCPPTSPNSADDGTTGGNAR 703
+S PR PP SP+SA T GG R
Sbjct: 26 SSLSPR--PPRSPHSATTVTRGGRRR 49
Score = 22.6 bits (46), Expect(2) = 8.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 677 DGTTGGNARRACRSWAR 727
+G GG ARR R W R
Sbjct: 83 EGGGGGGARRCRRRWRR 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,829,741
Number of Sequences: 37544
Number of extensions: 430899
Number of successful extensions: 1454
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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