Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00089
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4639| Best HMM Match : Saccharop_dh (HMM E-Value=3e-06)             99   2e-21
SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_31106| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)                31   0.96 
SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.9  
SB_13154| Best HMM Match : DnaJ (HMM E-Value=7.9e-11)                  29   2.9  
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)                    28   9.0  

>SB_4639| Best HMM Match : Saccharop_dh (HMM E-Value=3e-06)
          Length = 268

 Score =   99 bits (238), Expect = 2e-21
 Identities = 44/71 (61%), Positives = 54/71 (76%)
 Frame = +2

Query: 266 YRLYGEQVVKAAIESKTHYVDVSGEPEFMELMQLNYNEQAKDAGVYVISACGFDSIPCDL 445
           YR YGE VVKAA+E+  H++DVSGEPEF+E MQL Y++ AK  GV+VI ACGFDSIP D+
Sbjct: 85  YRFYGEPVVKAAVENGCHHLDVSGEPEFLETMQLKYHDLAKQKGVHVIGACGFDSIPADM 144

Query: 446 GVIHLMKNFEG 478
           GV    + F G
Sbjct: 145 GVAFATEQFPG 155



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
 Frame = +1

Query: 547 GGVLHYGTWESLVHSLANSHK--LKPLRKQLYPSQLPSYKPKL 669
           G V HYGT+ S+++ +A++ +  LK +RKQL+PS++P++ PKL
Sbjct: 161 GFVGHYGTYHSIIYGVASNFEGNLKKVRKQLFPSRMPTFGPKL 203



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 33/50 (66%)
 Frame = +3

Query: 6   LIIFGATGFTGSRAVLEMIRLSKKYPALTWGIAGRSEKKLEELKQEATQK 155
           +++FGA+GFTG     E+ + SK      W +AGR++ KLE++ +EA ++
Sbjct: 9   IVVFGASGFTGQFVAREVAKNSKG--KFKWAVAGRNKAKLEKVLREAAEE 56


>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 30/91 (32%), Positives = 42/91 (46%)
 Frame = +3

Query: 12  IFGATGFTGSRAVLEMIRLSKKYPALTWGIAGRSEKKLEELKQEATQKSGEDQTNLKTFI 191
           +FGATGF G R V+   RL +    LT    G  E  +  L+         D   +  F 
Sbjct: 25  VFGATGFLG-RYVIN--RLGRVGTQLTVPYRG-DEHDIRHLRLMG------DLGQIDFFD 74

Query: 192 ADVSDEKSLRSMCEQARVVVNVAGRTDYTEN 284
             + DE+S+  M + + VVVN+ GR   T N
Sbjct: 75  FHLKDEESIAKMVKHSNVVVNLIGRGFETRN 105


>SB_31106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 37

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 189 IADVSDEKSLRSMCEQARVVVNVAG 263
           IA+V DE+SL  MC + ++V+N  G
Sbjct: 12  IANVDDEESLNRMCSRTKIVLNCVG 36


>SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 939

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 214 DFSSDTSAINVLRLVWSSPLF*VASCFNSSSFFSERPAMPQVKAGYFLDSLIISSTARLP 35
           D+    S++ +  L W + LF V    NSS    E+   P +K+  F  S  I+     P
Sbjct: 38  DYKLCNSSLVMKSLEWRTVLFIVLCIINSSQALYEKETFPSIKSRTFFQSGNITIAGLFP 97

Query: 34  V 32
           V
Sbjct: 98  V 98


>SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
 Frame = -1

Query: 335 RSRQHSESLIRW--------LPSRPVLRIVGTARNVHHNSGLFAHAPQRL 210
           R R+ S SL+ W         P +   RIV   R + HN+   AH  QRL
Sbjct: 106 RKRKRSRSLVEWTALAKRKKFPQQKATRIVAGMRRLAHNARPAAHRKQRL 155


>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1565

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +2

Query: 209 EVVEEHVRTSQSCGERCGPYRLYGEQVVKAAIESKTHYVDVSGEPEFMELMQLNYNEQAK 388
           +++E H    +      G   L G+QV+ +  + + +    + + EF  L     N    
Sbjct: 585 DILEIHCIAFKQLVNSNGVQFLRGKQVLSSRADPRVNITKTNLDDEFYNLKLTIINVTVN 644

Query: 389 DAGVYVISACG 421
           D+G+YV  A G
Sbjct: 645 DSGMYVCDAVG 655


>SB_13154| Best HMM Match : DnaJ (HMM E-Value=7.9e-11)
          Length = 340

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 562 YGTWESLVHSLANSHKLKPLRKQLYPSQLPSYKPKLCRRWYHR 690
           Y TW+ +      S  +KP +K LY S+   +K KL  RW  R
Sbjct: 23  YPTWDHICWLSTESRIIKPKQKTLY-SKKKEFKFKLKARWKGR 64


>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 237 LVRTCSSTTSHPIHQL*TF*DWSGLRHFSE*PLVLILRVSSRSAQRCPK 91
           L R CS+++SH  H+L  F    G   F + P+  ++   SR    CPK
Sbjct: 398 LARQCSASSSHAFHELRLFECAEGNCLF-QGPVAQLVPHMSREGLECPK 445


>SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 227 VRTSQSCGERCGPYRLYGEQVVKAAIESKTHYVDVSGEPEFMELM 361
           +R   S  E C P ++   ++ +A+I S TH   V G   F+ L+
Sbjct: 6   MRKDPSNQESCYPRKIVRYKIQRASINSSTHRTSVMGHTCFITLI 50


>SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)
          Length = 770

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 305 ESKTHYVDVSGEPEFMELMQLNYNEQAKDAGVYVISACG 421
           E  T+ +D  G      ++Q+  N  AKDAGVYV  A G
Sbjct: 181 EGVTYCLDARGAGLTCAVLQI-VNASAKDAGVYVCEARG 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,240,038
Number of Sequences: 59808
Number of extensions: 472933
Number of successful extensions: 1247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)