Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00089
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.3  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   2.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.2  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    23   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 728 SAPRNGRHDAHSL 690
           S+ RNGRH+ HSL
Sbjct: 53  SSRRNGRHNVHSL 65


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 681 VPQEGMRVVPAVPGRG 728
           VPQ G R  P  PG+G
Sbjct: 26  VPQPGRRPFPTFPGQG 41


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 154 F*VASCFNSSSFFSERPAMPQVKAGYFLDSLIISSTARL 38
           F +A  +   + + + PA+ ++   YF DS +I     L
Sbjct: 144 FSIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEEAQNL 182


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 154 F*VASCFNSSSFFSERPAMPQVKAGYFLDSLIISSTARL 38
           F +A  +   + + + PA+ ++   YF DS +I     L
Sbjct: 144 FSIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEEAQNL 182


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 681 VPQEGMRVVPAVPGRG 728
           VPQ G R  P  PG+G
Sbjct: 12  VPQPGRRPFPTFPGQG 27


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 285 CSPYSRYGPQRSPQLWL 235
           C  Y R+ PQ    +WL
Sbjct: 339 CIGYGRFPPQSLTDMWL 355


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 285 CSPYSRYGPQRSPQLWL 235
           C  Y R+ PQ    +WL
Sbjct: 307 CIGYGRFPPQSLTDMWL 323


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 279 PYSRYGPQRSPQLWLVRTCSSTTSHPIHQ 193
           P  RY P+R   L+L R  S +     HQ
Sbjct: 719 PCVRYYPRRKEWLYLHRARSESEFEMYHQ 747


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,915
Number of Sequences: 438
Number of extensions: 4141
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)