Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00088
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    80   4e-16
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    64   3e-11
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    60   2e-10
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    29   0.67 
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    28   1.5  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   2.0  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    27   2.7  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   3.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   6.2  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       26   6.2  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   6.2  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   6.2  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   6.2  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.2  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 36/64 (56%), Positives = 46/64 (71%)
 Frame = +1

Query: 259 PFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELI 438
           PF   IGVGQ+I+GWD+G+  M +GEK KLTI    GYG RG   +IPP++TL F+VEL+
Sbjct: 46  PFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELL 105

Query: 439 NIGD 450
            I D
Sbjct: 106 AIND 109



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = +2

Query: 176 KHGDMLTMHYTGTLDDGHKFDSSYDR 253
           K GD +TMHYTGTL +G KFDSS DR
Sbjct: 18  KPGDRITMHYTGTLTNGKKFDSSVDR 43


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 29/63 (46%), Positives = 43/63 (68%)
 Frame = +1

Query: 256 QPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVEL 435
           +PF F +G G+VI+GWD G+  M  G +RK+TIPA + YG +     IP ++TL FEV+L
Sbjct: 299 KPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKL 357

Query: 436 INI 444
           + +
Sbjct: 358 VRV 360



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 107 AGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSS 244
           + P+   LK  VV   V  G    + +G  + M Y G L++G  FD +
Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN 295


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 27/63 (42%), Positives = 44/63 (69%)
 Frame = +1

Query: 256 QPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVEL 435
           +PFTF +G+ +VIKGWD G++ M VG +R + IPA++ YG +     IP ++ L F+V+L
Sbjct: 300 KPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKL 358

Query: 436 INI 444
           + +
Sbjct: 359 LAV 361


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 423  EMQCSVGRNHVAGSALSVAQGCGNSQFTFLTNAHVKQALVPSL 295
            ++  ++GR H+AG  +    GC   Q +FL+   V   ++ SL
Sbjct: 996  QLSYNLGRLHIAGDYIFSCVGCRTLQRSFLSGLSVCTGIIDSL 1038


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 594 ESHDKLVEEIFQHEDQDKNGFISPEEF-SGPKHDEL*MSLRSL 719
           ++ +K V +IF   D++K+G ++ EEF  G K D   +S  SL
Sbjct: 143 DTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSL 185


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 513 EEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDQDKNGFISPEEFSGPKHD 692
           +E+S+++ ++ + +D  E  +D K  +       EE+ Q+E+  K      EE   P   
Sbjct: 419 QEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEV 478

Query: 693 EL 698
           EL
Sbjct: 479 EL 480


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 376 ERGAGN-VIPPHATLHFEVEL 435
           E G GN +IPP  + H+EVEL
Sbjct: 42  EPGHGNLIIPPDVSAHYEVEL 62


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 57  RRCAACLCWLPWPGPRSRV 113
           R C  C CWLP     SRV
Sbjct: 113 RMCGTCKCWLPDRSHHSRV 131


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 373 GERGAGNVIPPHATLHFEVELINIGDSP 456
           G+ G+G + P  AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 12/146 (8%)
 Frame = +2

Query: 104 FAGPEVTELKTEVVSV-----PEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRV---- 256
           FA PE  +L   + SV          T++ H ++  M+    +D   + +  YD +    
Sbjct: 312 FARPEEDDLADTLSSVITDYLDHKIKTETFHEEVKQMY--SWIDVAERTEKVYDSICSEN 369

Query: 257 NLL---RSKLALGK*SRDGTRACLTCALVRNVN*LFPHPWATESAEPAT*FLPTLHCISK 427
           NL    R KL  G     G   CL  A+   V  L    W     +PA   + +   ISK
Sbjct: 370 NLRLIDRLKLYYGCGQWAGKLFCLLIAIDYLVMVLLEWIWPASDIDPAVDRVSSTFKISK 429

Query: 428 WS*STSVTLHRPQTCSRKSTPIRTTC 505
            +   S+ L  P    +K T I+T C
Sbjct: 430 QNFDESLVLTDP----KKKTKIKTAC 451


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 101 TFAGPEVTELKTEVVSVPEGCTTKSKH 181
           TF   ++T L+ +++ +PEG +T  KH
Sbjct: 174 TFDDLQLTPLQRKLMGLPEGGSTSGKH 200


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 573 EDIKQMLESHDKLVEEIFQHEDQDKNGFISP 665
           E+ K+  + +D   +EI    +QD  GF++P
Sbjct: 207 EEGKEFWDDYDIAAKEILSLYEQDPEGFVNP 237


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -3

Query: 527 VAHFFAESMLSLSASISLNTFVAGGESPMLINSTSKCNVAWGGITLPAPRSP*PKDAGIV 348
           V HF    + +LSA++SL T V       L +ST     +W G  +  P+   P   G V
Sbjct: 459 VEHFKLRKITALSAALSLGT-VLFCLHTFLCDSTVLMTWSWDGYPIKGPQ---PYPHGAV 514

Query: 347 SL 342
           S+
Sbjct: 515 SI 516


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 573 EDIKQMLESHDKLVEEIFQHEDQDKNGFISPEEFSGPKHDEL 698
           E +K   E H +  +E+ +H+D D   + S  +F+  KHD++
Sbjct: 34  EAMKADRERHIRQEKEMKRHDD-DGRQYQSDRKFAKSKHDDI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,536
Number of Sequences: 5004
Number of extensions: 58117
Number of successful extensions: 184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)