Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00088
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      108   4e-24
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05)                29   5.0  
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)                 29   5.0  
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)                   28   6.6  
SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092)                    28   8.8  
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  108 bits (260), Expect = 4e-24
 Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
 Frame = +1

Query: 262 FTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELIN 441
           F F +G G VI+GW+QGLLDMC+GEKRKLTIP  L YGE GAG  IPPHATL+ +VEL+ 
Sbjct: 72  FDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVE 131

Query: 442 I-GDSPPATNVFKEIDADKDNMLSAKK 519
           I G      NVF  ID + D +L+ ++
Sbjct: 132 IQGSKESDPNVFGMIDKNNDKVLTQEE 158



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = +2

Query: 53  MTTLRCVLMLVALAGATFAGPEVT-ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 229
           M  L  +L +VA +G      E   ELK EVVS PE CT K+  GD L+MHYTG L +G+
Sbjct: 1   MKGLMNLLAIVAFSGLALGAEEPKGELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGN 60

Query: 230 KFDSSYDR 253
           KFDSS DR
Sbjct: 61  KFDSSLDR 68



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/47 (48%), Positives = 30/47 (63%)
 Frame = +3

Query: 510 REEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDQDKN 650
           +EEV +YLK+Q     GG  S+D      SHD +V EIFQ ED+DK+
Sbjct: 156 QEEVKNYLKEQ-----GGMPSDDEA----SHDTIVSEIFQQEDKDKD 193


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
 Frame = +1

Query: 256 QPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGA----GNVIPPHATLHF 423
           QPF F IG G VIKG++QG+  MCVG+KRK+ IP +L YG++G+    GN+   + TL +
Sbjct: 146 QPFEFTIGGGTVIKGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTY 205

Query: 424 EVELINIGDSPPATNVFKEIDADKDNMLSAKK 519
            +EL ++   PP +++F  +D + D  LS ++
Sbjct: 206 NLELFDVRKPPPHSDMFSHMDENGDRKLSREE 237



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 25/59 (42%), Positives = 39/59 (66%)
 Frame = +3

Query: 510 REEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDQDKNGFISPEEFSGPK 686
           REEVS Y++KQ   A+        ++    H+++V+ +F++ED D++G IS EEFSGPK
Sbjct: 235 REEVSAYMRKQ---AEAQFAPTYDQRWQHHHERMVDNVFEYEDHDEDGHISHEEFSGPK 290



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +2

Query: 125 ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYD 250
           +++ E   VP  C  K+K GD + +HYTG + DG  FD++ D
Sbjct: 99  KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRD 140


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 603 DKLVEEIFQHEDQDKNGFISPEEF 674
           D++VE +F + D DKNG IS EEF
Sbjct: 696 DEMVEHVFAYADADKNGEISYEEF 719


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 519 LLRGEHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSAL 376
           L+  E V+ + V  +E V  R  + DV QLH + + S+GR  V+   L
Sbjct: 177 LIERESVIAVRVHLVECVWFRLPILDVQQLHVKYERSLGRELVSNLLL 224


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +3

Query: 507  LREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDQDKNGFISPEE 671
            +REE  D L++++      E+ E+ ++ LE + K + E ++HE Q+K   +   E
Sbjct: 2061 VREETVDELREKV------ELLEEKEKALELYSKSIAEKYEHESQEKKKIVEISE 2109


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 576  DIKQMLESHDKLVEEIFQHEDQDKNGFISPEEF 674
            D K+  E   ++ E +    D+DK+GF+S +EF
Sbjct: 992  DPKERDEEISRMREHVMNEIDKDKDGFVSQDEF 1024


>SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 552 ADGGEVSEDIKQMLESH-DKLVEEIFQHEDQDKNGFISPEEF 674
           A GG    D ++++E H   +VE +F+  D +K+G IS +EF
Sbjct: 263 ASGGTAVPD-RRVVERHVSAMVEAVFRVYDTNKDGTISSKEF 303


>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 113 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRVN 259
           P  T  K +++  P+G  TK +HG++ T+ +     DG+      D  N
Sbjct: 51  PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGNVITLVNDAAN 97


>SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05)
          Length = 611

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +3

Query: 516 EVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDQDKNGFISPEEF 674
           E ++ +   M     G  +++  +++E+  K+V+E F+     K+G +S +EF
Sbjct: 211 ESAEKILDNMEEPSSGCTADNTDRLIETVTKIVDEAFKKSHVSKSGKLSAKEF 263


>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
          Length = 466

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 113 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRVN 259
           P  T  K +++  P+G  TK +HG++ T+ +     DG+      D  N
Sbjct: 165 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGNVITLVNDAAN 211


>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
          Length = 375

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 368 PKDAGIVSLRFSPTHMSSKPWSHPLITC 285
           PK  G  S      H SS  W HP ++C
Sbjct: 257 PKSHGAASPSLMGQHFSSLMWQHPQVSC 284


>SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092)
          Length = 403

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 564 EVSEDIKQMLESHDKLVEEIFQHEDQDKNGFISPEE 671
           E +E++   L   + L++  F   D DK+GF++PEE
Sbjct: 321 EQAEEVYATLADTEILLQN-FAEVDADKDGFVTPEE 355


>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -2

Query: 480 FLEH-VCGRWRVTDVDQLHFEMQCSVGRNHVAGSALS--VAQGCGNSQFTFLTNAHVKQA 310
           F++H V  R  V+ ++ ++ E+   +    +    +S  V QG    Q   L NA+ +  
Sbjct: 444 FIKHSVLDRLHVSGLE-VNLELSTMLATQTINSQKISGLVVQGVNEKQDIHLPNAYTRDC 502

Query: 309 LVPSLDHLPNANLERK 262
           +    DH+P     R+
Sbjct: 503 IPAQRDHIPTPESARR 518


>SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 164 TTKSKHGDMLTMHYTGT----LDDGHKFDSSYDRVNLLRSKLALGK*SRD 301
           T+  +HG  LT+H        L   H+F S Y RV++L  K  +   S+D
Sbjct: 369 TSNPQHGSTLTLHTNRICCFLLSLSHEFSSYYGRVHILVVKSLVAYDSKD 418


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,239,651
Number of Sequences: 59808
Number of extensions: 483168
Number of successful extensions: 1265
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)