Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00087
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   3.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   4.1  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   5.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.6  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 67  SSELQCERTVCARQ*GPQQGKANTQQDSRR 156
           +S+L+C+R +     GPQQ  A+  + + R
Sbjct: 64  NSDLRCKRKIQFMPYGPQQQPASVARRNAR 93


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = -2

Query: 200 RRL*CNWKCRCRPQTRRESCWVFA----FPCCGPY*RAQTVRSHCSSDESLLPCQ 48
           + L CN K  C+ ++   SC V       P C P  +       CS+D + +P Q
Sbjct: 131 KELFCNGKPDCKDESDENSCTVETDPNRAPDCDPT-QCVLPDCFCSADGTRIPGQ 184


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = -2

Query: 200 RRL*CNWKCRCRPQTRRESCWVFAFP----CCGPY*RAQTVRSHCSSDESLLPCQ 48
           + L CN K  C+ ++   SC V   P     C P  +       CS+D + +P Q
Sbjct: 124 KELFCNGKPDCKDESDENSCTVETDPNRALDCDPT-QCVLPDCFCSADGTRIPGQ 177


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 197 GGVKTVTISTGPISKRCAAASPGLSTPPKDSS 292
           G V  +T S GP S      S G S+P    S
Sbjct: 112 GNVPPLTPSPGPPSHPYTVISNGYSSPMSSGS 143


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 187 VTGSVAVVHRH 155
           VTG++ ++HRH
Sbjct: 3   VTGNLGIMHRH 13


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,209
Number of Sequences: 336
Number of extensions: 2910
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)