Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00087
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    29   0.64 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   1.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   7.9  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   7.9  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 305 ILKILTTFKISSVSLVKRAYTMEPGTNCPQT*RPRRNSAQKW 430
           +++ LT+++I + ++V     ++P T CPQ    RR   QK+
Sbjct: 241 MIQELTSYEIDTHNIVVNQLLLDPNTTCPQC-MARRKMQQKY 281


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/61 (19%), Positives = 27/61 (44%)
 Frame = -1

Query: 633 PCGPSCHNLYANDMAFLMPCETSRETTSRQTPEPWLSSSCAHLHRVDVVAARNQVVQVIV 454
           P G  C NLY +    + PC    +  + +T +  + +   +  R+  +    Q++ + +
Sbjct: 44  PNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAI 103

Query: 453 D 451
           D
Sbjct: 104 D 104


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 633 PCGPSCHNLYANDMAFLMPCETSRETTSRQTPEPWLSSSCAH---LHRVDVV 487
           P       LYA       P E+ ++ T R T E  +SSS  H   +H +D++
Sbjct: 373 PQNSGSETLYAVKEFRRKPAESQKKYTKRLTSEFCISSSLRHPNVIHTLDLI 424


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 194 DGGVKTVTISTGPISKRCAAASPGLSTPPKDSSLPTDILK 313
           D GV +V   T P+     + SP LS+P   +S P++ L+
Sbjct: 314 DLGVSSVVSVTSPLQSCTNSPSPPLSSPASSAS-PSESLR 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,867
Number of Sequences: 5004
Number of extensions: 47140
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)