Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00087
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664...    30   2.0  
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943...    30   2.0  
11_06_0706 + 26460400-26462254,26462499-26462562,26462929-264629...    28   8.1  
11_06_0697 + 26371193-26371397,26371562-26374254                       28   8.1  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     28   8.1  

>11_04_0332 +
           16465360-16465769,16465873-16466272,16466379-16466423,
           16467113-16467139,16467201-16467266,16467889-16467950,
           16468049-16468123,16468218-16468383,16468611-16468734,
           16469737-16469843,16469992-16470102
          Length = 530

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 663 IRSGSNLRRCPCGPSCHNLYANDMAFLMPCETSRETTSRQTPEPWLSS 520
           I  G  LR    GPSC  ++  D+   + C+T          +PW SS
Sbjct: 130 IGGGQVLRESLNGPSCEAVHLTDIQSSIECDTFIPPIDLSVFQPWYSS 177


>06_03_0105 +
           16693771-16693780,16693833-16693876,16694274-16694348,
           16694548-16694784,16694880-16695050,16695137-16695250
          Length = 216

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 185 NWKCRCRPQTRRESCWVF 132
           N+ CRCRP+ RR   W +
Sbjct: 5   NYVCRCRPENRRNKGWAY 22


>11_06_0706 +
           26460400-26462254,26462499-26462562,26462929-26462981,
           26464400-26464401,26464528-26464598,26464938-26465020,
           26465065-26465126
          Length = 729

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 600 NDMAFLMPCETSRETTSRQTPEPWLSSSCAHLHRVDVVAARNQVVQVIVD 451
           +D+   + C  SRE      PE  + ++ + L RV VV  +N V+   +D
Sbjct: 491 HDLLRQLACYLSREECFVGNPESLVGNTVSKLRRVSVVTDKNMVMLPSMD 540


>11_06_0697 + 26371193-26371397,26371562-26374254
          Length = 965

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 600 NDMAFLMPCETSRETTSRQTPEPWLSSSCAHLHRVDVVAARNQVVQVIVD 451
           +D+   + C  SRE      PE  + ++ + L RV VV  +N V+   +D
Sbjct: 442 HDLLRQLACYLSREECFVGNPESLVGNTVSKLRRVSVVTDKNMVMLPSMD 491


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = +2

Query: 203 VKTVTISTGPISKRCAAASPGLSTPPKDSSLPTDILKILTTFKISSVSLVKRAYTMEPGT 382
           V T  +   PI+   A++S   ++PP++ +  T + +      ++S S+   +       
Sbjct: 259 VSTTPVPRNPIAANVASSSVAAASPPRNLASTTKVSQNSIAANLASSSVSATSTASRGAA 318

Query: 383 NCPQT*RPRRNSAQKW 430
                  P+R+S Q W
Sbjct: 319 PACYPVDPQRSSNQDW 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,206,837
Number of Sequences: 37544
Number of extensions: 358827
Number of successful extensions: 1128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)