Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00087
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF068708-5|AAK68200.1|  628|Caenorhabditis elegans P granule abn...    28   7.3  
AF068708-4|AAC17755.1|  693|Caenorhabditis elegans P granule abn...    28   7.3  
AB120729-1|BAC87886.1|  693|Caenorhabditis elegans PGL-3 protein.      28   7.3  
Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical
           protein C11E4.7 protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 669 VGIRSGSNLRRCPCGPSCHNLYANDMAFLMPCETSRETTSRQTPEPWLSSSC 514
           + + SG  L    C P CH+L+  D+  LM   +S  T ++ TP    SSSC
Sbjct: 36  ISLISGLTLLPTSC-PQCHSLHTLDINKLMSSISSLNTATKITPH-ISSSSC 85


>AF068708-5|AAK68200.1|  628|Caenorhabditis elegans P granule
           abnormality protein 3,isoform b protein.
          Length = 628

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
 Frame = +2

Query: 206 KTVTISTGPISKRCAAASPGLSTPP-KDSSLP---TDILKILTTFKISSVSLVKRAYTME 373
           K  T S GP +   AA    +   P    ++P   TD+  +L + KI   S+   A+ + 
Sbjct: 393 KQTTTSNGPTTVSTAAQVVTVEKMPFSRQTIPCEGTDLANVLNSAKIIGESVTVAAHDVI 452

Query: 374 P-------GTNCPQT*RPRRNSAQKWSLPTQ 445
           P         N P T  P + S+  W  PT+
Sbjct: 453 PEKLNAEKNDNTPSTASPVQFSSDGWDSPTK 483


>AF068708-4|AAC17755.1|  693|Caenorhabditis elegans P granule
           abnormality protein 3,isoform a protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
 Frame = +2

Query: 206 KTVTISTGPISKRCAAASPGLSTPP-KDSSLP---TDILKILTTFKISSVSLVKRAYTME 373
           K  T S GP +   AA    +   P    ++P   TD+  +L + KI   S+   A+ + 
Sbjct: 458 KQTTTSNGPTTVSTAAQVVTVEKMPFSRQTIPCEGTDLANVLNSAKIIGESVTVAAHDVI 517

Query: 374 P-------GTNCPQT*RPRRNSAQKWSLPTQ 445
           P         N P T  P + S+  W  PT+
Sbjct: 518 PEKLNAEKNDNTPSTASPVQFSSDGWDSPTK 548


>AB120729-1|BAC87886.1|  693|Caenorhabditis elegans PGL-3 protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
 Frame = +2

Query: 206 KTVTISTGPISKRCAAASPGLSTPP-KDSSLP---TDILKILTTFKISSVSLVKRAYTME 373
           K  T S GP +   AA    +   P    ++P   TD+  +L + KI   S+   A+ + 
Sbjct: 458 KQTTTSNGPTTVSTAAQVVTVEKMPFSRQTIPCEGTDLANVLNSAKIIGESVTVAAHDVI 517

Query: 374 P-------GTNCPQT*RPRRNSAQKWSLPTQ 445
           P         N P T  P + S+  W  PT+
Sbjct: 518 PEKLNAEKNDNTPSTASPVQFSSDGWDSPTK 548


>Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical
           protein T24A11.3 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 388 PADLKTQTEFST-KMVFADARSIND-HLYNLVTGGDYINAV 504
           P +LK  T   T KM F DA+ IND +  N   G +++N +
Sbjct: 236 PKELKYVTTMGTEKMAFLDAKVINDIYCPNACQGRNHLNCL 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,804,238
Number of Sequences: 27780
Number of extensions: 281741
Number of successful extensions: 969
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)