Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00087
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   3.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +2

Query: 11  HVDYWGEG----KVTNLDRVRGFRRSYNVNEQFALVSKGHSK 124
           H+  W  G    K+ +LD  +     YN N ++ +V   HS+
Sbjct: 176 HIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSE 217


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 58  KRLSSELQCERTVCARQ*GPQQGKAN 135
           + L + L  E++VC  + G  Q KAN
Sbjct: 20  EELKTRLHTEQSVCKTETGIDQQKAN 45


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 144 GFPSCLWTTATLPVTSETAAL 206
           G    LWT A+    SET AL
Sbjct: 294 GASDILWTQASAKAISETGAL 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,505
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)