Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00086
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    31   0.20 
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    29   0.60 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.2  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   3.2  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    26   4.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.4  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   7.4  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    25   9.8  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 278  AQLTEMSLPTYSNRXTPKKINEWSSIRQ*C 367
            A++ ++ L  YS++ TP K+NEW++    C
Sbjct: 1910 AEVAKLLLEVYSSQDTPTKLNEWANYFMLC 1939


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 605 DLLSKLPIPLPVDKLPVDNPL 667
           +LLSKLP+  P  K+P+ NP+
Sbjct: 553 ELLSKLPVQTPNQKMPLMNPM 573


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +3

Query: 444 TNLMGLQPYSEENDQFLKIMMAQNQI 521
           T L GLQ  S  ND FLK    QN I
Sbjct: 259 TFLWGLQSESYSNDVFLKFQRIQNYI 284


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 624 GNLDNKSPIKFLQRAPVSLSAIPPHKPI*QNLNPLS 517
           GNL ++ P KF   + V  +AI P KP  +  N LS
Sbjct: 222 GNLHSQQPPKFSVDSSVDDNAITPRKPFSKIPNRLS 257


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 363 HCRILLHSLIFFGVXRFEYVGKLISVSW 280
           H R L HSLI   + R EY+  +    W
Sbjct: 38  HARFLKHSLIQVSIERIEYLYSIFPNIW 65


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 318  VGHRRKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPY 470
            V H  +S   AV++S   V      + SK  HS NG       N++G QP+
Sbjct: 1064 VSHVGESTKPAVNNSTKPVA-----VTSKNGHSRNGSHAAHSNNVIGTQPH 1109


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 GAQGVPLIYIALNTLGTLVKGHIFYLDLPLL 236
           G  G PL  IALNTL TL K H+   D+P++
Sbjct: 355 GLSGPPLKPIALNTLRTLRK-HL-SSDIPII 383


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 158 PAYLYSFEYVGNLSKGSYFLPGLALTDNSNDM 253
           P+ L ++ Y  +    SYFLP L + DN+N +
Sbjct: 38  PSPLRNWFYEQSKKVYSYFLPELLVDDNANKL 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,752
Number of Sequences: 5004
Number of extensions: 62677
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)